Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:142644240..142648928-chr6:142651290..142656139,5	MCF-7	breast:
2	chr6:142622670..142624423-chr6:142644987..142647948,3	MCF-7	breast:
3	chr6:142642940..142645383-chr6:142647071..142650024,3	MCF-7	breast:
4	chr6:142629358..142632248-chr6:142646121..142647772,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112414	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142624800-142651800	Weak transcription	HSMM	muscle
2	chr6:142626000-142650600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:142633200-142651000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:142635000-142651000	Weak transcription	NHEK	skin
5	chr6:142640400-142649800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142640400-142652000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:142640600-142651200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:142643000-142653800	Weak transcription	Fetal Heart	heart
9	chr6:142645200-142647800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:142645400-142647800	Weak transcription	Liver	Liver
11	chr6:142645400-142650200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:142645400-142650600	Weak transcription	HMEC	breast
13	chr6:142646000-142652200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:142646000-142652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:142646400-142647600	Weak transcription	Fetal Lung	lung
16	chr6:142646400-142652400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:142646400-142652400	Enhancers	HUVEC	blood vessel
18	chr6:142646600-142647400	Enhancers	A549	lung
19	chr6:142646600-142647800	Weak transcription	HepG2	liver
20	chr6:142646600-142650000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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