Variant report

Variant	rs9496348
Chromosome Location	chr6:142670300-142670301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10223419	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13437159	0.90[AFR][1000 genomes]
rs28489749	1.00[AFR][1000 genomes]
rs9321864	1.00[AFR][1000 genomes]
rs9321868	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9484622	1.00[AFR][1000 genomes]
rs9484623	1.00[AFR][1000 genomes]
rs9484624	1.00[AFR][1000 genomes]
rs9484625	1.00[AFR][1000 genomes]
rs9484626	1.00[AFR][1000 genomes]
rs9484637	0.90[AFR][1000 genomes]
rs9484642	0.90[AFR][1000 genomes]
rs9484643	1.00[AFR][1000 genomes]
rs9496335	1.00[AFR][1000 genomes]
rs9496337	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496339	1.00[AFR][1000 genomes]
rs9496340	1.00[AFR][1000 genomes]
rs9496342	1.00[AFR][1000 genomes]
rs9496343	1.00[YRI][hapmap]
rs9496344	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496345	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496347	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9496352	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496353	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496366	1.00[AFR][1000 genomes]
rs9496370	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496377	0.90[AFR][1000 genomes]
rs9496380	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9496382	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9496389	1.00[AFR][1000 genomes]
rs9496390	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:142663400-142676400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:142665600-142680200	Weak transcription	HUVEC	blood vessel
5	chr6:142666000-142677000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:142666800-142670400	Weak transcription	Liver	Liver
7	chr6:142667400-142674800	Weak transcription	Fetal Lung	lung
8	chr6:142669400-142671400	Genic enhancers	HepG2	liver
9	chr6:142670000-142671000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:142670200-142671200	Genic enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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