Variant report

Variant	rs9496335
Chromosome Location	chr6:142636732-142636733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142628313..142630816-chr6:142633666..142637433,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223419	1.00[AFR][1000 genomes]
rs13437159	0.90[AFR][1000 genomes]
rs28489749	1.00[AFR][1000 genomes]
rs9321864	1.00[AFR][1000 genomes]
rs9321868	1.00[AFR][1000 genomes]
rs9484622	1.00[AFR][1000 genomes]
rs9484623	1.00[AFR][1000 genomes]
rs9484624	1.00[AFR][1000 genomes]
rs9484625	1.00[AFR][1000 genomes]
rs9484626	1.00[AFR][1000 genomes]
rs9484637	0.90[AFR][1000 genomes]
rs9484642	0.90[AFR][1000 genomes]
rs9484643	1.00[AFR][1000 genomes]
rs9496337	1.00[AFR][1000 genomes]
rs9496339	1.00[AFR][1000 genomes]
rs9496340	1.00[AFR][1000 genomes]
rs9496342	1.00[AFR][1000 genomes]
rs9496344	1.00[AFR][1000 genomes]
rs9496345	1.00[AFR][1000 genomes]
rs9496347	0.81[AFR][1000 genomes]
rs9496348	1.00[AFR][1000 genomes]
rs9496352	1.00[AFR][1000 genomes]
rs9496353	1.00[AFR][1000 genomes]
rs9496366	1.00[AFR][1000 genomes]
rs9496370	1.00[AFR][1000 genomes]
rs9496377	0.90[AFR][1000 genomes]
rs9496380	0.90[AFR][1000 genomes]
rs9496382	0.90[AFR][1000 genomes]
rs9496389	1.00[AFR][1000 genomes]
rs9496390	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1029666	chr6:142594099-142643084	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142624800-142651800	Weak transcription	HSMM	muscle
2	chr6:142626000-142650600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:142626600-142639800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:142629400-142637000	Genic enhancers	HepG2	liver
5	chr6:142632200-142638000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:142632400-142644200	Weak transcription	HMEC	breast
7	chr6:142632600-142638200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:142633200-142651000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:142634800-142637600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:142634800-142637800	Weak transcription	Liver	Liver
11	chr6:142634800-142638200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:142634800-142638200	Weak transcription	Stomach Mucosa	stomach
13	chr6:142634800-142640200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:142634800-142641400	Weak transcription	Fetal Lung	lung
15	chr6:142634800-142641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:142634800-142646400	Weak transcription	HUVEC	blood vessel
17	chr6:142635000-142651000	Weak transcription	NHEK	skin
18	chr6:142635600-142640000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:142635800-142640800	Weak transcription	NHLF	lung
20	chr6:142636200-142639600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:142636600-142637600	Weak transcription	A549	lung

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