Variant report

Variant	rs28496278
Chromosome Location	chr4:100755097-100755098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100751084..100753070-chr4:100754307..100755963,2	K562	blood:
2	chr4:100754974..100758082-chr4:100867339..100871318,4	K562	blood:
3	chr4:100742423..100744425-chr4:100753530..100755293,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10031708	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13353685	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029546	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029570	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483260	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28500755	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28524542	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28756104	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835612	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307241	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9993254	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9994042	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9994187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:100743600-100756400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:100743800-100756800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:100744200-100756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:100744200-100756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:100744200-100756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
13	chr4:100744400-100756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:100745000-100755800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:100745000-100756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:100746200-100756600	Weak transcription	Esophagus	oesophagus
19	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
20	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr4:100749200-100756400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:100750200-100756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr4:100750200-100756600	Weak transcription	GM12878-XiMat	blood
24	chr4:100750800-100759800	Weak transcription	HMEC	breast
25	chr4:100751800-100757400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:100752200-100765200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr4:100752400-100755600	Enhancers	Fetal Lung	lung
28	chr4:100753400-100765000	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr4:100753600-100755600	Enhancers	Liver	Liver
30	chr4:100753800-100757000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:100753800-100757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:100754200-100755600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr4:100754200-100761000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr4:100754400-100755200	Enhancers	Colon Smooth Muscle	Colon
35	chr4:100754600-100755200	Enhancers	Ovary	ovary
36	chr4:100754600-100755400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:100754600-100755600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:100754600-100764400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr4:100754800-100755200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:100754800-100755200	Enhancers	Aorta	Aorta
41	chr4:100754800-100759800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:100755000-100755200	Enhancers	Pancreas	Pancrea
43	chr4:100755000-100755400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:100755000-100755400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr4:100755000-100759800	Strong transcription	NHEK	skin
46	chr4:100755000-100766400	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links