Variant report

Variant	rs9307241
Chromosome Location	chr4:100747164-100747165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100745459..100748215-chr4:100790977..100792734,2	MCF-7	breast:
2	chr4:100745615..100747707-chr4:100749417..100751608,2	K562	blood:
3	chr4:100745222..100748703-chr4:100869288..100872836,3	K562	blood:
4	chr4:100745759..100748161-chr4:100844127..100845854,2	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10031708	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13353685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029546	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029560	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029567	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029601	0.87[CEU][hapmap]
rs17029606	0.87[CEU][hapmap]
rs17029719	0.88[LWK][hapmap]
rs28483260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28496278	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28500755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28524542	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28602366	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28605761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28756104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73835612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993254	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9994042	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9994187	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:100743000-100749400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:100743600-100756400	Weak transcription	Primary T cells from cord blood	blood
7	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:100743800-100756800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:100744200-100747200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:100744200-100756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:100744200-100756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:100744200-100756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
15	chr4:100744400-100756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr4:100744800-100748400	Genic enhancers	NHEK	skin
17	chr4:100745000-100747400	Genic enhancers	Primary B cells from cord blood	blood
18	chr4:100745000-100755800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:100745000-100756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:100745200-100749400	Genic enhancers	Primary B cells from peripheral blood	blood
22	chr4:100745400-100748000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:100745400-100749400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr4:100745600-100747400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:100746000-100748200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:100746200-100750800	Enhancers	HMEC	breast
28	chr4:100746200-100756600	Weak transcription	Esophagus	oesophagus
29	chr4:100746400-100747200	Enhancers	GM12878-XiMat	blood
30	chr4:100746400-100748600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:100746400-100750200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:100746400-100753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:100746400-100753200	Weak transcription	Aorta	Aorta
34	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
35	chr4:100746800-100748800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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