Variant report

Variant	rs17029601
Chromosome Location	chr4:100774638-100774639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100774290..100777114-chr4:100784977..100787156,4	K562	blood:
2	chr4:100763005..100767706-chr4:100772545..100776617,4	K562	blood:
3	chr4:100774002..100776880-chr4:100781292..100784858,3	MCF-7	breast:
4	chr4:100763005..100766209-chr4:100774032..100776506,3	K562	blood:
5	chr4:100771730..100775423-chr4:100868763..100871713,3	K562	blood:
6	chr4:100765436..100767417-chr4:100773829..100775971,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000070190	Chromatin interaction
ENSG00000164032	Chromatin interaction

rs_ID	r²[population]
rs10001730	0.89[AFR][1000 genomes]
rs10002820	0.89[AFR][1000 genomes]
rs10014424	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10016741	1.00[YRI][hapmap]
rs10018937	0.89[AFR][1000 genomes]
rs10031708	0.87[CEU][hapmap]
rs1365494	0.88[YRI][hapmap];0.89[AFR][1000 genomes]
rs17029546	0.87[CEU][hapmap]
rs17029560	0.87[CEU][hapmap]
rs17029567	0.87[CEU][hapmap]
rs17029570	0.87[CEU][hapmap]
rs17029606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17029641	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs17029667	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17029696	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17029698	0.89[AFR][1000 genomes]
rs2282587	0.89[AFR][1000 genomes]
rs28375729	1.00[YRI][hapmap]
rs28445732	0.89[AFR][1000 genomes]
rs28553972	0.89[AFR][1000 genomes]
rs28561548	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs28566137	0.89[AFR][1000 genomes]
rs28635099	0.89[AFR][1000 genomes]
rs2866175	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs28705829	0.84[AFR][1000 genomes]
rs28709045	0.89[AFR][1000 genomes]
rs28824275	0.89[AFR][1000 genomes]
rs28893880	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4463078	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs57238114	0.95[AFR][1000 genomes]
rs57862852	0.95[AFR][1000 genomes]
rs60994806	0.95[AFR][1000 genomes]
rs62305048	0.89[AFR][1000 genomes]
rs9307241	0.87[CEU][hapmap]
rs9993254	0.87[CEU][hapmap]
rs9994042	0.87[CEU][hapmap]

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
4	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:100763000-100775600	Weak transcription	Esophagus	oesophagus
6	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:100767600-100776800	Weak transcription	HMEC	breast
8	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:100768600-100774800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:100768800-100776800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:100769000-100775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:100769000-100775400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:100769000-100775600	Weak transcription	Primary T cells from cord blood	blood
14	chr4:100769000-100777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr4:100769000-100777800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:100769800-100776800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:100771200-100775400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:100772600-100775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:100772600-100776600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:100772600-100777600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:100773400-100775600	Genic enhancers	Monocytes-CD14+_RO01746	blood
22	chr4:100773400-100776600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:100773600-100776600	Strong transcription	NHEK	skin
24	chr4:100773600-100776800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:100773800-100775200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr4:100773800-100775600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr4:100773800-100776400	Genic enhancers	GM12878-XiMat	blood
28	chr4:100773800-100776600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:100774000-100775600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:100774000-100775800	Strong transcription	Primary B cells from cord blood	blood
31	chr4:100774000-100776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:100774200-100775600	Strong transcription	Primary B cells from peripheral blood	blood
33	chr4:100774200-100775600	Enhancers	HepG2	liver
34	chr4:100774200-100775800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:100774200-100776000	Genic enhancers	Primary monocytes fromperipheralblood	blood
36	chr4:100774400-100775200	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:100774400-100775800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr4:100774400-100776200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr4:100774400-100777400	Weak transcription	K562	blood
40	chr4:100774400-100777600	Weak transcription	Fetal Lung	lung
41	chr4:100774600-100775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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