Variant report

Variant	rs10014424
Chromosome Location	chr4:100864364-100864365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100855120..100857614-chr4:100862703..100864671,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10001730	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10002820	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10016741	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10018937	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10461176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1365494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17029542	1.00[JPT][hapmap]
rs17029575	0.80[ASN][1000 genomes]
rs17029577	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17029592	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17029594	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17029601	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17029606	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17029641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17029667	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17029681	0.94[ASN][1000 genomes]
rs17029696	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17029698	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17029717	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2282587	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2298734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28375729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs28445732	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28497573	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28553972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28561548	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28566137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28604943	0.98[ASN][1000 genomes]
rs28635099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866175	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28705829	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28709045	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28824275	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28893880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3737485	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3775510	0.92[ASN][1000 genomes]
rs4463078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57238114	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs57862852	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs58512740	0.80[ASN][1000 genomes]
rs59439986	0.87[ASN][1000 genomes]
rs59768994	0.98[ASN][1000 genomes]
rs60203069	0.98[ASN][1000 genomes]
rs60584294	0.80[ASN][1000 genomes]
rs60899666	0.80[ASN][1000 genomes]
rs60994806	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61229555	0.94[ASN][1000 genomes]
rs62305048	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
5	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
6	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
8	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:100840200-100864600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:100840200-100865800	Weak transcription	Ovary	ovary
12	chr4:100840200-100866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:100840200-100867000	Weak transcription	Gastric	stomach
14	chr4:100840400-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:100840400-100866800	Weak transcription	Aorta	Aorta
16	chr4:100840400-100867000	Weak transcription	Esophagus	oesophagus
17	chr4:100847800-100864600	Weak transcription	Hela-S3	cervix
18	chr4:100847800-100866200	Weak transcription	HSMMtube	muscle
19	chr4:100848400-100866200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr4:100849600-100864800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:100850400-100864800	Weak transcription	HUVEC	blood vessel
22	chr4:100852000-100865400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:100852200-100866000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:100855800-100864600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:100855800-100866000	Weak transcription	Colonic Mucosa	Colon
26	chr4:100856200-100866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:100856800-100865400	Weak transcription	Brain Angular Gyrus	brain
28	chr4:100856800-100866000	Weak transcription	Fetal Brain Male	brain
29	chr4:100856800-100866200	Weak transcription	NH-A	brain
30	chr4:100857000-100864400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr4:100857000-100864800	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:100857000-100866000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:100857000-100866200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:100857200-100866200	Weak transcription	Thymus	Thymus
35	chr4:100857200-100866200	Weak transcription	Spleen	Spleen
36	chr4:100857800-100864400	Weak transcription	NHEK	skin
37	chr4:100857800-100865400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:100857800-100866000	Weak transcription	Fetal Kidney	kidney
39	chr4:100857800-100866000	Weak transcription	NHLF	lung
40	chr4:100857800-100866200	Weak transcription	HMEC	breast
41	chr4:100857800-100866400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:100858000-100864800	Weak transcription	Adipose Nuclei	Adipose
43	chr4:100858000-100865400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:100858000-100866000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:100858000-100866000	Weak transcription	NHDF-Ad	bronchial
46	chr4:100858000-100866200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr4:100858000-100866200	Weak transcription	Fetal Brain Female	brain
48	chr4:100858000-100866200	Weak transcription	Fetal Thymus	thymus
49	chr4:100858200-100864600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr4:100858200-100864800	Weak transcription	Primary B cells from peripheral blood	blood

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