The 2.0 version of rSNPBase

Variant report

Variant rs10002820
Chromosome Location chr4:100790814-100790815
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:71 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:100761000-100801200 Weak transcription Placenta Amnion Placenta Amnion
2 chr4:100768400-100799000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr4:100777600-100800800 Weak transcription Thymus Thymus
4 chr4:100777800-100799200 Weak transcription Fetal Thymus thymus
5 chr4:100777800-100801000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr4:100778000-100792000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr4:100778000-100798600 Weak transcription Duodenum Mucosa Duodenum
8 chr4:100778000-100800200 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr4:100778200-100798200 Weak transcription Placenta Placenta
10 chr4:100778400-100800600 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr4:100781200-100791800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr4:100781200-100800800 Weak transcription Esophagus oesophagus
13 chr4:100781200-100800800 Weak transcription Spleen Spleen
14 chr4:100781200-100801000 Weak transcription Pancreas Pancrea
15 chr4:100781400-100795800 Strong transcription Primary B cells from cord blood blood
16 chr4:100782800-100792200 Strong transcription Primary T regulatory cells fromperipheralblood blood
17 chr4:100782800-100793400 Strong transcription GM12878-XiMat blood
18 chr4:100783000-100791000 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr4:100783000-100793400 Strong transcription Primary monocytes fromperipheralblood blood
20 chr4:100783000-100793600 Strong transcription Monocytes-CD14+_RO01746 blood
21 chr4:100783000-100796000 Strong transcription Primary B cells from peripheral blood blood
22 chr4:100783200-100793000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr4:100784400-100793000 Strong transcription Primary neutrophils fromperipheralblood blood
24 chr4:100784800-100792600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
25 chr4:100786400-100798000 Weak transcription Liver Liver
26 chr4:100787800-100797800 Weak transcription Fetal Lung lung
27 chr4:100788200-100797800 Weak transcription Fetal Adrenal Gland Adrenal Gland
28 chr4:100788800-100799600 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr4:100789000-100793200 Strong transcription NHEK skin
30 chr4:100789600-100799400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr4:100789600-100799600 Weak transcription Left Ventricle heart
32 chr4:100789600-100799600 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr4:100789600-100799600 Weak transcription NH-A brain
34 chr4:100789600-100800200 Weak transcription NHLF lung
35 chr4:100789600-100800600 Weak transcription iPS-20b Cell Line embryonic stem cell
36 chr4:100789600-100805200 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr4:100789600-100814200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr4:100789800-100796000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr4:100789800-100797600 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr4:100789800-100798600 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr4:100789800-100799000 Weak transcription NHDF-Ad bronchial
42 chr4:100789800-100799200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr4:100789800-100799400 Weak transcription Stomach Smooth Muscle stomach
44 chr4:100789800-100799600 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr4:100789800-100800000 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr4:100789800-100800000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
47 chr4:100789800-100800200 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr4:100789800-100800200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr4:100789800-100800200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr4:100789800-100800800 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015