Variant report

Variant	rs59439986
Chromosome Location	chr4:100972219-100972220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100970987..100972778-chr4:100975629..100977996,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10001730	0.86[ASN][1000 genomes]
rs10002820	0.84[ASN][1000 genomes]
rs10014424	0.87[ASN][1000 genomes]
rs10016741	0.86[ASN][1000 genomes]
rs10018937	0.84[ASN][1000 genomes]
rs10461176	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11097690	0.86[EUR][1000 genomes]
rs12641552	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12643730	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1365494	0.86[ASN][1000 genomes]
rs17029606	0.83[ASN][1000 genomes]
rs17029641	0.84[ASN][1000 genomes]
rs17029667	0.86[ASN][1000 genomes]
rs17029681	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17029696	0.94[ASN][1000 genomes]
rs17029698	0.94[ASN][1000 genomes]
rs17029717	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282587	0.83[ASN][1000 genomes]
rs2298734	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28375729	0.87[ASN][1000 genomes]
rs28445732	0.84[ASN][1000 genomes]
rs28497573	0.84[ASN][1000 genomes]
rs28553972	0.87[ASN][1000 genomes]
rs28561548	0.93[ASN][1000 genomes]
rs28566137	0.86[ASN][1000 genomes]
rs28604943	0.86[ASN][1000 genomes]
rs28635099	0.87[ASN][1000 genomes]
rs2866175	0.86[ASN][1000 genomes]
rs28709045	0.94[ASN][1000 genomes]
rs28824275	0.86[ASN][1000 genomes]
rs28893880	0.86[ASN][1000 genomes]
rs3775510	0.83[ASN][1000 genomes]
rs4463078	0.94[ASN][1000 genomes]
rs57238114	0.83[ASN][1000 genomes]
rs57862852	0.83[ASN][1000 genomes]
rs59768994	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60203069	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs60994806	0.83[ASN][1000 genomes]
rs61229555	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62305048	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100971800-100975800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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