Variant report

Variant	rs61229555
Chromosome Location	chr4:100911693-100911694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100910888..100913568-chr4:100928620..100930251,2	MCF-7	breast:
2	chr4:100869894..100871447-chr4:100910758..100913096,2	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10001730	0.90[ASN][1000 genomes]
rs10002820	0.87[ASN][1000 genomes]
rs10014424	0.94[ASN][1000 genomes]
rs10016741	0.90[ASN][1000 genomes]
rs10018937	0.87[ASN][1000 genomes]
rs10461176	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12641552	0.95[AMR][1000 genomes]
rs12643730	0.85[AMR][1000 genomes]
rs1365494	0.90[ASN][1000 genomes]
rs17029606	0.86[ASN][1000 genomes]
rs17029641	0.91[ASN][1000 genomes]
rs17029667	0.93[ASN][1000 genomes]
rs17029681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029696	0.98[ASN][1000 genomes]
rs17029698	0.98[ASN][1000 genomes]
rs17029717	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2282587	0.86[ASN][1000 genomes]
rs2298734	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28375729	0.94[ASN][1000 genomes]
rs28445732	0.87[ASN][1000 genomes]
rs28497573	0.91[ASN][1000 genomes]
rs28553972	0.94[ASN][1000 genomes]
rs28561548	1.00[ASN][1000 genomes]
rs28566137	0.93[ASN][1000 genomes]
rs28604943	0.93[ASN][1000 genomes]
rs28635099	0.94[ASN][1000 genomes]
rs2866175	0.89[ASN][1000 genomes]
rs28709045	0.98[ASN][1000 genomes]
rs28824275	0.93[ASN][1000 genomes]
rs28893880	0.93[ASN][1000 genomes]
rs3775510	0.86[ASN][1000 genomes]
rs4463078	0.99[ASN][1000 genomes]
rs57238114	0.86[ASN][1000 genomes]
rs57862852	0.86[ASN][1000 genomes]
rs59439986	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59768994	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60203069	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60994806	0.86[ASN][1000 genomes]
rs62305048	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967777	chr4:100909755-100913192	Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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