Variant report

Variant	rs28561548
Chromosome Location	chr4:100880420-100880421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100867408..100872938-chr4:100878480..100883746,9	MCF-7	breast:
2	chr4:100876921..100880449-chr4:100889880..100893435,3	K562	blood:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10001730	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10002820	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10014424	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10016741	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10018937	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs10461176	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1365494	1.00[ASW][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17029542	1.00[JPT][hapmap]
rs17029577	1.00[JPT][hapmap]
rs17029592	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs17029594	0.83[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap]
rs17029601	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17029606	1.00[ASW][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs17029641	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17029667	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17029681	1.00[ASN][1000 genomes]
rs17029696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17029698	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17029717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2282587	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2298734	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28375729	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs28445732	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28497573	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28553972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28566137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28604943	0.93[ASN][1000 genomes]
rs28635099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2866175	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs28705829	0.83[AFR][1000 genomes]
rs28709045	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28824275	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs28893880	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3737485	1.00[JPT][hapmap]
rs3775510	0.86[ASN][1000 genomes]
rs4463078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57238114	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs57862852	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs59439986	0.93[ASN][1000 genomes]
rs59768994	0.93[ASN][1000 genomes]
rs60203069	0.93[ASN][1000 genomes]
rs60994806	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61229555	1.00[ASN][1000 genomes]
rs62305048	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100872600-100881800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:100872600-100886000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:100872600-100886000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:100872600-100886200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:100877400-100885400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:100880400-100889600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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