Variant report

Variant	rs17029606
Chromosome Location	chr4:100777733-100777734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100777426..100780201-chr4:100868427..100870605,2	K562	blood:
2	chr4:100777569..100779939-chr4:100780512..100782819,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10001730	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10002820	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10014424	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10016741	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs10018937	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10031708	0.87[CEU][hapmap]
rs10461176	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1365494	1.00[ASW][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17029542	1.00[JPT][hapmap]
rs17029546	0.87[CEU][hapmap]
rs17029560	0.87[CEU][hapmap]
rs17029567	0.87[CEU][hapmap]
rs17029570	0.87[CEU][hapmap]
rs17029575	0.88[ASN][1000 genomes]
rs17029577	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17029592	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[ASN][1000 genomes]
rs17029594	0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs17029601	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs17029641	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs17029667	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17029681	0.86[ASN][1000 genomes]
rs17029696	1.00[ASW][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17029698	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17029717	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2282587	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298734	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28375729	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs28445732	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28497573	0.92[ASN][1000 genomes]
rs28553972	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28561548	1.00[ASW][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28566137	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28604943	0.94[ASN][1000 genomes]
rs28635099	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2866175	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28705829	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28709045	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs28824275	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28893880	1.00[ASW][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3737485	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3775510	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463078	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56996205	0.86[ASN][1000 genomes]
rs57001633	0.86[ASN][1000 genomes]
rs57238114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57862852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58512740	0.88[ASN][1000 genomes]
rs58699064	0.85[ASN][1000 genomes]
rs59439986	0.83[ASN][1000 genomes]
rs59768994	0.94[ASN][1000 genomes]
rs60203069	0.94[ASN][1000 genomes]
rs60584294	0.88[ASN][1000 genomes]
rs60899666	0.88[ASN][1000 genomes]
rs60994806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61229555	0.86[ASN][1000 genomes]
rs62305048	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9307241	0.87[CEU][hapmap]
rs9993254	0.87[CEU][hapmap]
rs9994042	0.87[CEU][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100769000-100777800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:100775600-100778000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:100775600-100778000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:100775600-100778600	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr4:100775800-100780800	Weak transcription	Esophagus	oesophagus
8	chr4:100776200-100778600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:100776600-100777800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr4:100776600-100777800	Genic enhancers	GM12878-XiMat	blood
11	chr4:100776600-100777800	Genic enhancers	NHEK	skin
12	chr4:100776600-100778200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr4:100776800-100778000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr4:100776800-100778000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:100776800-100778000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr4:100776800-100778000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:100776800-100778000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr4:100776800-100778000	Genic enhancers	HMEC	breast
19	chr4:100776800-100778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:100776800-100778800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:100776800-100779400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:100777000-100778000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:100777000-100778400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:100777000-100778600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr4:100777000-100778600	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
26	chr4:100777000-100782600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:100777200-100777800	Enhancers	Fetal Thymus	thymus
28	chr4:100777200-100778000	Strong transcription	Primary T cells from cord blood	blood
29	chr4:100777200-100778000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:100777200-100778600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr4:100777400-100777800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:100777400-100778000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr4:100777400-100778000	Enhancers	K562	blood
34	chr4:100777400-100778400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:100777400-100778600	Flanking Active TSS	Primary hematopoietic stem cells	blood
36	chr4:100777600-100777800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:100777600-100777800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr4:100777600-100778000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr4:100777600-100778000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr4:100777600-100778000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr4:100777600-100778000	Enhancers	Duodenum Mucosa	Duodenum
42	chr4:100777600-100778200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:100777600-100778200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:100777600-100778200	Enhancers	Placenta	Placenta
45	chr4:100777600-100778400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr4:100777600-100778400	Enhancers	Adipose Nuclei	Adipose
47	chr4:100777600-100778800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr4:100777600-100779400	Enhancers	Fetal Lung	lung
49	chr4:100777600-100780800	Weak transcription	Spleen	Spleen
50	chr4:100777600-100787400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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