Variant report

Variant	rs17029717
Chromosome Location	chr4:100934358-100934359
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100933295..100935388-chr4:100941563..100944305,2	K562	blood:
2	chr4:100932443..100934795-chr4:100942614..100944305,2	K562	blood:
3	chr4:100871193..100872810-chr4:100932962..100935747,2	K562	blood:
4	chr4:100869883..100872810-chr4:100932962..100936343,3	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10001730	0.86[ASN][1000 genomes]
rs10002820	0.84[ASN][1000 genomes]
rs10014424	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10016741	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10018937	0.84[ASN][1000 genomes]
rs10461176	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11097690	0.86[EUR][1000 genomes]
rs12641552	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12643730	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1365494	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17029542	1.00[JPT][hapmap]
rs17029577	1.00[JPT][hapmap]
rs17029592	1.00[JPT][hapmap]
rs17029594	1.00[JPT][hapmap]
rs17029606	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17029641	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17029667	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17029681	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17029696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17029698	0.98[ASN][1000 genomes]
rs2282587	0.83[ASN][1000 genomes]
rs2298734	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28375729	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28445732	0.84[ASN][1000 genomes]
rs28497573	0.87[ASN][1000 genomes]
rs28553972	0.91[ASN][1000 genomes]
rs28561548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28566137	0.89[ASN][1000 genomes]
rs28604943	0.89[ASN][1000 genomes]
rs28635099	0.91[ASN][1000 genomes]
rs2866175	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs28709045	0.98[ASN][1000 genomes]
rs28824275	0.89[ASN][1000 genomes]
rs28893880	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3737485	1.00[JPT][hapmap]
rs3775510	0.83[ASN][1000 genomes]
rs4463078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs57238114	0.83[ASN][1000 genomes]
rs57862852	0.83[ASN][1000 genomes]
rs59439986	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59768994	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60203069	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs60994806	0.83[ASN][1000 genomes]
rs61229555	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62305048	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000173	chr4:100928002-100964404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100930000-100939400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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