The 2.0 version of rSNPBase

Variant report

Variant rs28445732
Chromosome Location chr4:100787665-100787666
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:100761000-100801200 Weak transcription Placenta Amnion Placenta Amnion
2 chr4:100768400-100799000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr4:100777600-100800800 Weak transcription Thymus Thymus
4 chr4:100777800-100799200 Weak transcription Fetal Thymus thymus
5 chr4:100777800-100801000 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr4:100778000-100792000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
7 chr4:100778000-100798600 Weak transcription Duodenum Mucosa Duodenum
8 chr4:100778000-100800200 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr4:100778200-100798200 Weak transcription Placenta Placenta
10 chr4:100778400-100789600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr4:100778400-100800600 Weak transcription Primary T killer memory cells from peripheral blood blood
12 chr4:100780000-100788200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr4:100781200-100789600 Weak transcription Gastric stomach
14 chr4:100781200-100791800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr4:100781200-100800800 Weak transcription Esophagus oesophagus
16 chr4:100781200-100800800 Weak transcription Spleen Spleen
17 chr4:100781200-100801000 Weak transcription Pancreas Pancrea
18 chr4:100781400-100795800 Strong transcription Primary B cells from cord blood blood
19 chr4:100782600-100790800 Strong transcription Primary T helper cells fromperipheralblood blood
20 chr4:100782800-100792200 Strong transcription Primary T regulatory cells fromperipheralblood blood
21 chr4:100782800-100793400 Strong transcription GM12878-XiMat blood
22 chr4:100783000-100791000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr4:100783000-100793400 Strong transcription Primary monocytes fromperipheralblood blood
24 chr4:100783000-100793600 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr4:100783000-100796000 Strong transcription Primary B cells from peripheral blood blood
26 chr4:100783200-100789000 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr4:100783200-100793000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr4:100783400-100790600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr4:100784200-100790000 Strong transcription Primary T cells fromperipheralblood blood
30 chr4:100784400-100787800 Enhancers Fetal Lung lung
31 chr4:100784400-100793000 Strong transcription Primary neutrophils fromperipheralblood blood
32 chr4:100784800-100790400 Strong transcription Primary hematopoietic stem cells blood
33 chr4:100784800-100790400 Strong transcription Primary T helper cells PMA-I stimulated --
34 chr4:100784800-100792600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
35 chr4:100785000-100788000 Strong transcription NHEK skin
36 chr4:100785000-100790400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr4:100785200-100787800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
38 chr4:100785600-100789000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr4:100785800-100790000 Strong transcription Primary T cells from cord blood blood
40 chr4:100785800-100790400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr4:100786000-100788800 Strong transcription Primary T helper naive cells fromperipheralblood blood
42 chr4:100786000-100789800 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
43 chr4:100786400-100798000 Weak transcription Liver Liver
44 chr4:100786600-100789000 Weak transcription Colon Smooth Muscle Colon
45 chr4:100787200-100787800 Strong transcription HMEC breast
46 chr4:100787200-100790600 Strong transcription Primary hematopoietic stem cells short term culture blood
47 chr4:100787400-100788200 Enhancers Ovary ovary
48 chr4:100787400-100790800 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr4:100787600-100789200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015