Variant report

Variant	rs9994042
Chromosome Location	chr4:100743389-100743390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100740809..100746722-chr4:100867916..100872607,6	K562	blood:
2	chr4:100741071..100743736-chr4:100867756..100869487,2	MCF-7	breast:
3	chr4:100735043..100738034-chr4:100738478..100743711,4	K562	blood:
4	chr4:100743200..100746311-chr4:100755153..100758233,3	K562	blood:
5	chr4:100742423..100744425-chr4:100753530..100755293,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction
ENSG00000070190	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10031708	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13353685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029546	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029560	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029567	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029570	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17029601	0.87[CEU][hapmap]
rs17029606	0.87[CEU][hapmap]
rs17029719	0.81[LWK][hapmap]
rs28483260	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28496278	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28500755	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28524542	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28602366	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28605761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28756104	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73835612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9307241	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9993254	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9994187	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100738800-100744400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr4:100739200-100744000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr4:100739400-100743800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr4:100739600-100743800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:100739600-100745400	Weak transcription	Esophagus	oesophagus
6	chr4:100739800-100744400	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:100740000-100744200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:100740000-100745000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr4:100740200-100744200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:100740200-100745000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:100740800-100744200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr4:100741000-100745200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:100741200-100743400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:100741200-100744800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:100741400-100743400	Weak transcription	Spleen	Spleen
17	chr4:100741400-100744800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr4:100742000-100743400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:100742000-100744200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr4:100742000-100744200	Flanking Active TSS	GM12878-XiMat	blood
23	chr4:100742200-100743800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:100742200-100744000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr4:100742200-100744200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr4:100742200-100744200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr4:100742200-100745200	Enhancers	Primary B cells from peripheral blood	blood
28	chr4:100742600-100743600	Enhancers	Primary T cells from cord blood	blood
29	chr4:100742600-100743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:100742600-100743800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:100742800-100743400	Weak transcription	Left Ventricle	heart
32	chr4:100742800-100744000	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr4:100742800-100744800	Weak transcription	NHEK	skin
34	chr4:100742800-100746200	Weak transcription	HMEC	breast
35	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:100743000-100743400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:100743000-100743600	Enhancers	Fetal Heart	heart
38	chr4:100743000-100749400	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr4:100743200-100744000	Enhancers	Right Atrium	heart
40	chr4:100743200-100744000	ZNF genes & repeats	K562	blood
41	chr4:100743200-100744400	Enhancers	Primary hematopoietic stem cells	blood

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