Variant report

Variant	rs28602366
Chromosome Location	chr4:100753057-100753058
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100751084..100753070-chr4:100754307..100755963,2	K562	blood:
2	chr4:100751607..100753649-chr4:100758467..100761081,2	K562	blood:
3	chr4:100747526..100749241-chr4:100751851..100753367,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10031708	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13353685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28483260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28496278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28500755	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28524542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605761	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28756104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835612	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307241	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9993254	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9994042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9994187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:100743600-100756400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:100743800-100756800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:100744200-100756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:100744200-100756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:100744200-100756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
13	chr4:100744400-100756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:100745000-100755800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:100745000-100756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:100746200-100756600	Weak transcription	Esophagus	oesophagus
19	chr4:100746400-100753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:100746400-100753200	Weak transcription	Aorta	Aorta
21	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
22	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr4:100748000-100753400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:100749200-100756400	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr4:100749400-100753400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr4:100750200-100756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:100750200-100756600	Weak transcription	GM12878-XiMat	blood
28	chr4:100750400-100754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:100750600-100754200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr4:100750800-100754200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:100750800-100759800	Weak transcription	HMEC	breast
32	chr4:100751600-100753200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:100751800-100757400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:100752000-100754600	Weak transcription	Ovary	ovary
35	chr4:100752200-100753800	Strong transcription	Primary B cells from cord blood	blood
36	chr4:100752200-100765200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr4:100752400-100753200	Strong transcription	NHEK	skin
38	chr4:100752400-100753800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr4:100752400-100755600	Enhancers	Fetal Lung	lung
40	chr4:100753000-100754200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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