Variant report

Variant	rs17029560
Chromosome Location	chr4:100750722-100750723
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100745615..100747707-chr4:100749417..100751608,2	K562	blood:
2	chr4:100744480..100747115-chr4:100749681..100751608,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10031708	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13353685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029546	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029567	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029570	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17029601	0.87[CEU][hapmap]
rs17029606	0.87[CEU][hapmap]
rs28483260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28496278	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28500755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28524542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28605761	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28756104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73835612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9307241	1.00[CEU][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9993254	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9994042	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9994187	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:100743600-100756400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr4:100743800-100756800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:100744200-100756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:100744200-100756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:100744200-100756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
13	chr4:100744400-100756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:100745000-100755800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:100745000-100756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:100746200-100750800	Enhancers	HMEC	breast
19	chr4:100746200-100756600	Weak transcription	Esophagus	oesophagus
20	chr4:100746400-100753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:100746400-100753200	Weak transcription	Aorta	Aorta
22	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
23	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:100748000-100753400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:100748200-100750800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:100748800-100752200	Weak transcription	Primary B cells from cord blood	blood
27	chr4:100749200-100756400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:100749400-100751000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr4:100749400-100751200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr4:100749400-100753000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:100749400-100753400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr4:100750200-100751200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:100750200-100752400	Weak transcription	NHEK	skin
34	chr4:100750200-100756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr4:100750200-100756600	Weak transcription	GM12878-XiMat	blood
36	chr4:100750400-100754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:100750600-100752400	Weak transcription	Fetal Lung	lung
38	chr4:100750600-100754200	Strong transcription	Monocytes-CD14+_RO01746	blood

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