Variant report

Variant	rs28510448
Chromosome Location	chr9:71099629-71099630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10116868	0.95[EUR][1000 genomes]
rs10780955	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10780960	0.81[ASN][1000 genomes]
rs10780963	0.91[AFR][1000 genomes]
rs10780967	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10868852	0.91[AFR][1000 genomes]
rs10868877	0.91[AFR][1000 genomes]
rs10868922	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11142541	0.83[ASN][1000 genomes]
rs11142549	0.91[AFR][1000 genomes]
rs11142616	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11795356	0.85[AMR][1000 genomes]
rs12238439	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12343961	1.00[EUR][1000 genomes]
rs12343980	1.00[EUR][1000 genomes]
rs12350942	1.00[EUR][1000 genomes]
rs13439981	0.83[AFR][1000 genomes]
rs1353010	0.81[ASN][1000 genomes]
rs35011246	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4237244	0.81[EUR][1000 genomes]
rs4237245	0.95[EUR][1000 genomes]
rs7021955	0.83[AFR][1000 genomes]
rs7026163	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7039149	0.95[EUR][1000 genomes]
rs7042601	0.95[EUR][1000 genomes]
rs7855134	0.83[ASN][1000 genomes]
rs7866604	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr9:71077800-71103400	Weak transcription	Right Ventricle	heart
3	chr9:71078200-71103400	Weak transcription	HSMMtube	muscle
4	chr9:71087400-71107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:71092000-71101400	Weak transcription	Fetal Heart	heart
6	chr9:71092200-71115400	Weak transcription	Psoas Muscle	Psoas
7	chr9:71092400-71100800	Weak transcription	Ovary	ovary
8	chr9:71093600-71101600	Weak transcription	Fetal Intestine Large	intestine
9	chr9:71096600-71101600	Weak transcription	NHLF	lung
10	chr9:71096600-71108600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:71097800-71100000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr9:71098000-71100200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:71098000-71101400	Strong transcription	Fetal Stomach	stomach
14	chr9:71098200-71100600	Strong transcription	Fetal Lung	lung
15	chr9:71098200-71100800	Strong transcription	Colon Smooth Muscle	Colon
16	chr9:71098800-71099800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:71098800-71099800	Strong transcription	Fetal Muscle Leg	muscle
18	chr9:71098800-71100200	Strong transcription	Fetal Kidney	kidney
19	chr9:71098800-71101200	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:71098800-71101200	Strong transcription	Fetal Muscle Trunk	muscle
21	chr9:71098800-71102400	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:71099000-71102800	Strong transcription	Left Ventricle	heart
23	chr9:71099400-71103200	Weak transcription	Aorta	Aorta
24	chr9:71099600-71100200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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