Variant report

Variant	rs7866604
Chromosome Location	chr9:71056070-71056071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10116868	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10123848	1.00[CHB][hapmap]
rs10511957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10780955	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10780967	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10868879	0.82[CEU][hapmap]
rs10868922	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10868984	1.00[CEU][hapmap]
rs11142616	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11789244	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11791213	1.00[ASN][1000 genomes]
rs11792137	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11794424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11795356	1.00[ASN][1000 genomes]
rs12000789	0.82[CEU][hapmap]
rs12238439	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs12343961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343980	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350942	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1353010	0.82[CEU][hapmap]
rs17053702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17059173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs265083	0.82[CEU][hapmap]
rs28510448	1.00[EUR][1000 genomes]
rs35011246	0.95[EUR][1000 genomes]
rs4237244	0.81[EUR][1000 genomes]
rs4237245	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7026163	0.95[EUR][1000 genomes]
rs7039149	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7042123	0.82[CEU][hapmap]
rs7042601	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71045600-71061400	Weak transcription	NHLF	lung
2	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
3	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
4	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
5	chr9:71053000-71058200	Weak transcription	Fetal Stomach	stomach
6	chr9:71053000-71058200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:71053000-71061400	Weak transcription	Fetal Heart	heart
8	chr9:71053600-71056400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:71053800-71058200	Weak transcription	Rectal Smooth Muscle	rectum

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