Variant report

Variant	rs265083
Chromosome Location	chr9:71125832-71125833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10116868	0.82[CEU][hapmap]
rs10511957	0.82[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs10511958	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs10780955	0.82[CEU][hapmap]
rs10780960	0.85[CEU][hapmap]
rs10780967	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs10780986	0.85[CHD][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs10780999	0.86[JPT][hapmap];0.91[LWK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs10781002	0.87[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10868851	0.81[GIH][hapmap]
rs10868852	0.81[GIH][hapmap]
rs10868877	0.81[GIH][hapmap]
rs10868922	0.82[CEU][hapmap]
rs10868961	0.83[EUR][1000 genomes]
rs10868984	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11142391	0.81[GIH][hapmap]
rs11142449	0.81[GIH][hapmap]
rs11142461	0.81[GIH][hapmap]
rs11142616	0.82[CEU][hapmap]
rs11142697	0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs11792137	0.85[CEU][hapmap]
rs11794424	0.82[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs12000789	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12238439	0.91[GIH][hapmap]
rs12353500	0.91[GIH][hapmap]
rs12375820	0.81[CHD][hapmap];0.81[JPT][hapmap]
rs13439981	0.81[GIH][hapmap]
rs1353009	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs17053702	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs17054803	0.82[CEU][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs17059173	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs265072	0.97[EUR][1000 genomes]
rs265073	0.80[CHD][hapmap];0.86[JPT][hapmap]
rs265076	0.88[TSI][hapmap]
rs265087	0.84[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs265089	0.90[JPT][hapmap];0.82[YRI][hapmap]
rs4237245	0.82[CEU][hapmap]
rs4745041	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs4745083	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6560144	0.85[CEU][hapmap]
rs7019238	0.86[GIH][hapmap]
rs7034863	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs7039149	0.82[CEU][hapmap]
rs7039686	0.85[CEU][hapmap]
rs7855134	0.85[CEU][hapmap];0.91[GIH][hapmap]
rs7861495	0.88[TSI][hapmap]
rs7866604	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117000-71129600	Weak transcription	NHLF	lung
2	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:71120800-71130200	Weak transcription	Aorta	Aorta
4	chr9:71121000-71129000	Weak transcription	Psoas Muscle	Psoas
5	chr9:71121000-71129600	Weak transcription	Fetal Intestine Large	intestine
6	chr9:71121200-71128400	Weak transcription	Right Ventricle	heart
7	chr9:71121200-71129800	Weak transcription	Fetal Intestine Small	intestine
8	chr9:71122200-71133200	Weak transcription	Ovary	ovary
9	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:71123000-71128200	Weak transcription	Fetal Heart	heart
12	chr9:71123200-71128400	Weak transcription	Left Ventricle	heart
13	chr9:71123200-71129000	Weak transcription	Placenta	Placenta
14	chr9:71123200-71129600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:71123200-71130000	Weak transcription	HSMMtube	muscle
16	chr9:71123800-71130200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:71124000-71130600	Weak transcription	Stomach Mucosa	stomach
18	chr9:71124200-71129000	Weak transcription	Right Atrium	heart
19	chr9:71124200-71129600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr9:71124400-71126800	Weak transcription	Fetal Lung	lung
21	chr9:71124400-71129000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:71124600-71130000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr9:71124800-71126800	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:71124800-71126800	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:71124800-71128200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:71124800-71133200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:71125000-71126200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:71125000-71128400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:71125000-71130200	Weak transcription	Fetal Stomach	stomach
30	chr9:71125800-71126200	Enhancers	Rectal Smooth Muscle	rectum

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