Variant report

Variant	rs265087
Chromosome Location	chr9:71129950-71129951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69443336..69444165-chr9:71129673..71130579,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10123848	0.82[CEU][hapmap]
rs10511958	1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs10780960	1.00[CEU][hapmap]
rs10780986	0.86[JPT][hapmap];0.89[MEX][hapmap]
rs10780999	0.86[JPT][hapmap]
rs10781002	0.83[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10868879	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs10868984	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11142541	0.82[EUR][1000 genomes]
rs11142543	0.85[EUR][1000 genomes]
rs11142697	0.85[JPT][hapmap]
rs11789244	0.85[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs11792137	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12000789	0.85[CEU][hapmap]
rs12238439	0.85[CEU][hapmap];0.86[GIH][hapmap]
rs12353500	0.86[GIH][hapmap]
rs12375820	0.81[JPT][hapmap]
rs1353009	1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs1353010	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs265072	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs265073	0.86[JPT][hapmap]
rs265083	0.84[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs265089	0.89[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4745041	1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs4745083	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6560144	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7019238	0.81[GIH][hapmap]
rs7030076	0.85[EUR][1000 genomes]
rs7031619	0.85[EUR][1000 genomes]
rs7034863	0.86[JPT][hapmap]
rs7035038	0.85[EUR][1000 genomes]
rs7039686	1.00[CEU][hapmap]
rs7042123	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7042721	0.85[EUR][1000 genomes]
rs7855134	1.00[CEU][hapmap];0.86[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71117600-71142800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:71120800-71130200	Weak transcription	Aorta	Aorta
3	chr9:71122200-71133200	Weak transcription	Ovary	ovary
4	chr9:71122400-71132000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:71122600-71132400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:71123200-71130000	Weak transcription	HSMMtube	muscle
7	chr9:71123800-71130200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:71124000-71130600	Weak transcription	Stomach Mucosa	stomach
9	chr9:71124600-71130000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:71124800-71133200	Weak transcription	Fetal Muscle Trunk	muscle
11	chr9:71125000-71130200	Weak transcription	Fetal Stomach	stomach
12	chr9:71126200-71130000	Strong transcription	Stomach Smooth Muscle	stomach
13	chr9:71127400-71132800	Weak transcription	Fetal Lung	lung
14	chr9:71127400-71132800	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:71128400-71131600	Enhancers	Right Ventricle	heart
16	chr9:71128400-71131600	Enhancers	Hela-S3	cervix
17	chr9:71129000-71130600	Enhancers	Colon Smooth Muscle	Colon
18	chr9:71129000-71131000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:71129000-71131400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr9:71129000-71131400	Enhancers	Right Atrium	heart
21	chr9:71129000-71131800	Enhancers	Placenta	Placenta
22	chr9:71129400-71130200	Weak transcription	Left Ventricle	heart
23	chr9:71129600-71130400	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:71129600-71130600	Enhancers	Fetal Intestine Large	intestine
25	chr9:71129600-71130600	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:71129600-71130800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr9:71129600-71130800	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr9:71129600-71131000	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr9:71129600-71131000	Enhancers	NHLF	lung
30	chr9:71129800-71130800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:71129800-71130800	Enhancers	Fetal Intestine Small	intestine
32	chr9:71129800-71131000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr9:71129800-71131000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr9:71129800-71131200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr9:71129800-71132800	Weak transcription	Psoas Muscle	Psoas

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