Variant report

Variant	rs11789244
Chromosome Location	chr9:71156380-71156381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10116868	0.82[CEU][hapmap]
rs10123848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10511957	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs10511958	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs10780955	0.82[CEU][hapmap]
rs10780960	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs10780967	0.82[CEU][hapmap]
rs10868879	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10868922	0.82[CEU][hapmap]
rs10868984	0.82[CEU][hapmap]
rs10869040	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11142541	0.91[EUR][1000 genomes]
rs11142543	0.88[EUR][1000 genomes]
rs11142616	0.82[CEU][hapmap]
rs11790064	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11792137	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs11794424	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11795356	0.82[AMR][1000 genomes]
rs12238439	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12342668	1.00[ASN][1000 genomes]
rs1353009	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1353010	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17053702	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17054803	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs17059173	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs265076	1.00[MEX][hapmap]
rs265087	0.85[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs4237245	0.82[CEU][hapmap]
rs4745041	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs4745083	0.88[EUR][1000 genomes]
rs6560144	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs7030076	0.88[EUR][1000 genomes]
rs7031619	0.88[EUR][1000 genomes]
rs7035038	0.88[EUR][1000 genomes]
rs7039149	0.82[CEU][hapmap]
rs7039686	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs7042123	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7042721	0.88[EUR][1000 genomes]
rs7855134	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs7861495	1.00[MEX][hapmap]
rs7866604	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893413	chr9:71130848-71196984	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893411	chr9:71130848-71199545	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv893412	chr9:71130848-71199545	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024967	chr9:71130848-71210031	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71139600-71161600	Weak transcription	Spleen	Spleen
2	chr9:71145800-71161600	Weak transcription	Gastric	stomach
3	chr9:71148800-71156400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:71152200-71161600	Weak transcription	Right Ventricle	heart
5	chr9:71152200-71170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:71153200-71156400	Weak transcription	Aorta	Aorta
7	chr9:71153800-71161800	Weak transcription	Psoas Muscle	Psoas
8	chr9:71154200-71161600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:71155200-71157200	Enhancers	Colon Smooth Muscle	Colon
10	chr9:71155400-71156400	Enhancers	HSMMtube	muscle
11	chr9:71155400-71156600	Enhancers	Colonic Mucosa	Colon
12	chr9:71155400-71156600	Enhancers	Left Ventricle	heart
13	chr9:71155400-71157200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:71155400-71157400	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr9:71155400-71157400	Enhancers	Rectal Smooth Muscle	rectum
16	chr9:71155400-71157400	Enhancers	Right Atrium	heart
17	chr9:71155600-71156600	Enhancers	Fetal Muscle Leg	muscle
18	chr9:71155600-71157200	Enhancers	Fetal Lung	lung
19	chr9:71155600-71157400	Enhancers	Fetal Heart	heart
20	chr9:71155600-71161400	Weak transcription	Lung	lung
21	chr9:71155800-71156600	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr9:71155800-71156600	Enhancers	HepG2	liver
23	chr9:71155800-71157000	Enhancers	Brain Germinal Matrix	brain
24	chr9:71155800-71157000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr9:71155800-71157200	Enhancers	Stomach Mucosa	stomach
26	chr9:71155800-71157600	Enhancers	Fetal Intestine Large	intestine
27	chr9:71155800-71161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:71156000-71156400	Flanking Active TSS	Fetal Kidney	kidney
29	chr9:71156000-71156800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:71156000-71156800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr9:71156000-71156800	Enhancers	Fetal Stomach	stomach
32	chr9:71156000-71157000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr9:71156000-71157000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr9:71156200-71156400	Bivalent Enhancer	Fetal Brain Male	brain
35	chr9:71156200-71156600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:71156200-71156600	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr9:71156200-71156800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:71156200-71157000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr9:71156200-71157600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links