Variant report

Variant	rs17053702
Chromosome Location	chr9:71044389-71044390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10116868	1.00[CEU][hapmap]
rs10123848	1.00[CHB][hapmap]
rs10511957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511958	0.87[EUR][1000 genomes]
rs10780955	1.00[CEU][hapmap]
rs10780960	0.87[EUR][1000 genomes]
rs10780967	1.00[CEU][hapmap]
rs10868879	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs10868922	1.00[CEU][hapmap]
rs10868984	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11142541	0.90[EUR][1000 genomes]
rs11142543	0.87[EUR][1000 genomes]
rs11142616	1.00[CEU][hapmap]
rs11789244	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11791213	1.00[ASN][1000 genomes]
rs11792137	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795356	1.00[ASN][1000 genomes]
rs12000789	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs12238439	0.82[CEU][hapmap]
rs12343961	1.00[ASN][1000 genomes]
rs12343980	1.00[ASN][1000 genomes]
rs12350942	1.00[ASN][1000 genomes]
rs1353009	0.87[EUR][1000 genomes]
rs1353010	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs17054803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17059173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs265083	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4237245	1.00[CEU][hapmap]
rs4745041	0.87[EUR][1000 genomes]
rs6560144	0.87[EUR][1000 genomes]
rs7030076	0.87[EUR][1000 genomes]
rs7031619	0.87[EUR][1000 genomes]
rs7035038	0.87[EUR][1000 genomes]
rs7039149	1.00[CEU][hapmap]
rs7042123	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs7042721	0.87[EUR][1000 genomes]
rs7048646	0.80[AMR][1000 genomes]
rs7855134	0.90[EUR][1000 genomes]
rs7866604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71038600-71046600	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:71040600-71049000	Enhancers	Colon Smooth Muscle	Colon
4	chr9:71042200-71048000	Weak transcription	Small Intestine	intestine
5	chr9:71042400-71045400	Weak transcription	NHLF	lung
6	chr9:71042400-71046000	Weak transcription	Left Ventricle	heart
7	chr9:71042600-71044800	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:71043400-71050800	Weak transcription	Aorta	Aorta
9	chr9:71043400-71052200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:71043600-71048000	Weak transcription	Fetal Lung	lung
11	chr9:71043600-71050800	Weak transcription	Psoas Muscle	Psoas
12	chr9:71043600-71052800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:71043800-71048000	Weak transcription	Fetal Stomach	stomach
14	chr9:71043800-71050800	Weak transcription	Fetal Heart	heart

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