Variant report

Variant	rs17059173
Chromosome Location	chr9:71076769-71076770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10116868	1.00[CEU][hapmap]
rs10123848	1.00[CHB][hapmap]
rs10511957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511958	0.87[EUR][1000 genomes]
rs10780955	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs10780960	0.87[EUR][1000 genomes]
rs10780967	1.00[CEU][hapmap]
rs10868879	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs10868922	1.00[CEU][hapmap]
rs10868984	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11142541	0.90[EUR][1000 genomes]
rs11142543	0.87[EUR][1000 genomes]
rs11142616	1.00[CEU][hapmap]
rs11789244	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs11791213	1.00[ASN][1000 genomes]
rs11792137	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11794424	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795356	1.00[ASN][1000 genomes]
rs12000789	0.82[CEU][hapmap];0.97[EUR][1000 genomes]
rs12238439	0.82[CEU][hapmap]
rs12343961	1.00[ASN][1000 genomes]
rs12343980	1.00[ASN][1000 genomes]
rs12350942	1.00[ASN][1000 genomes]
rs12686170	0.83[AFR][1000 genomes]
rs1353009	0.87[EUR][1000 genomes]
rs1353010	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs17053702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054803	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs265083	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs4237245	1.00[CEU][hapmap]
rs4745041	0.87[EUR][1000 genomes]
rs6560144	0.87[EUR][1000 genomes]
rs7030076	0.87[EUR][1000 genomes]
rs7031619	0.87[EUR][1000 genomes]
rs7035038	0.87[EUR][1000 genomes]
rs7039149	1.00[CEU][hapmap]
rs7042123	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs7042721	0.87[EUR][1000 genomes]
rs7855134	0.90[EUR][1000 genomes]
rs7866604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
2	chr9:71065800-71080000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:71067800-71077000	Weak transcription	Lung	lung
4	chr9:71070200-71087000	Weak transcription	Aorta	Aorta
5	chr9:71070800-71100800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr9:71071600-71076800	Enhancers	Rectal Smooth Muscle	rectum
7	chr9:71071800-71078200	Enhancers	Colon Smooth Muscle	Colon
8	chr9:71073000-71077200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:71073200-71076800	Weak transcription	Fetal Heart	heart
10	chr9:71073400-71077000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:71075200-71098800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:71075400-71076800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:71075600-71077800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr9:71075600-71077800	Enhancers	Right Ventricle	heart
15	chr9:71075800-71078400	Enhancers	Fetal Stomach	stomach
16	chr9:71076000-71077600	Enhancers	Left Ventricle	heart
17	chr9:71076000-71077600	Enhancers	Ovary	ovary
18	chr9:71076000-71077800	Enhancers	Right Atrium	heart
19	chr9:71076200-71078200	Enhancers	HSMMtube	muscle
20	chr9:71076400-71077200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr9:71076400-71077600	Enhancers	Fetal Muscle Leg	muscle
22	chr9:71076400-71078600	Enhancers	Fetal Lung	lung
23	chr9:71076400-71098800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:71076600-71076800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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