Variant report

Variant	rs28521891
Chromosome Location	chr15:49308640-49308641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr15:49307963-49308664	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
SECISBP2L	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070675	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050556	0.95[AMR][1000 genomes]
rs3743293	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268652	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66783972	0.85[ASN][1000 genomes]
rs72727206	0.84[AMR][1000 genomes]
rs72727208	0.84[AMR][1000 genomes]
rs72741937	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741938	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741941	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72741953	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72741957	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741958	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741962	0.84[AMR][1000 genomes]
rs73406119	0.92[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49282800-49333400	Weak transcription	A549	lung
3	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
7	chr15:49297000-49309800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr15:49297200-49310000	Strong transcription	Liver	Liver
9	chr15:49297400-49310200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:49297600-49309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:49297800-49309800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:49298000-49309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:49298200-49308800	Strong transcription	Fetal Thymus	thymus
18	chr15:49298200-49309600	Strong transcription	Primary T cells from cord blood	blood
19	chr15:49298200-49309600	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr15:49298200-49309600	Strong transcription	Rectal Mucosa Donor 31	rectum
21	chr15:49298200-49309800	Strong transcription	Fetal Lung	lung
22	chr15:49298200-49309800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:49298200-49310000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:49298200-49310200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:49298200-49310200	Strong transcription	Osteobl	bone
26	chr15:49298200-49314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:49298200-49314600	Strong transcription	Adipose Nuclei	Adipose
28	chr15:49298200-49316200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr15:49298200-49316400	Strong transcription	Placenta	Placenta
30	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:49298400-49309800	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr15:49298400-49314000	Strong transcription	HSMM	muscle
33	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:49299000-49309800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr15:49299200-49310200	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr15:49299400-49310000	Strong transcription	Primary B cells from cord blood	blood
40	chr15:49299600-49309600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:49299800-49309400	Strong transcription	Primary hematopoietic stem cells	blood
42	chr15:49299800-49312200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:49301400-49309400	Strong transcription	Fetal Muscle Leg	muscle
44	chr15:49301400-49329000	Weak transcription	K562	blood
45	chr15:49303000-49310000	Strong transcription	NH-A	brain
46	chr15:49303000-49312800	Weak transcription	Lung	lung
47	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
48	chr15:49303200-49312400	Weak transcription	Fetal Intestine Small	intestine
49	chr15:49304200-49313200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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