Variant report

Variant	rs72741937
Chromosome Location	chr15:49301121-49301122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050556	0.95[AMR][1000 genomes]
rs28521891	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3743293	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268652	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66783972	0.85[ASN][1000 genomes]
rs72727206	0.84[AMR][1000 genomes]
rs72727208	0.84[AMR][1000 genomes]
rs72741938	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741942	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741944	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741949	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72741953	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72741957	0.95[AMR][1000 genomes]
rs72741958	0.95[AMR][1000 genomes]
rs72741962	0.84[AMR][1000 genomes]
rs73406119	0.92[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49282800-49333400	Weak transcription	A549	lung
3	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:49287600-49308000	Weak transcription	HepG2	liver
8	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:49289400-49303800	Weak transcription	Psoas Muscle	Psoas
10	chr15:49289800-49301200	Weak transcription	HMEC	breast
11	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
12	chr15:49291400-49307400	Weak transcription	Gastric	stomach
13	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
14	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:49292200-49301400	Weak transcription	Aorta	Aorta
16	chr15:49292200-49307800	Weak transcription	NHEK	skin
17	chr15:49292400-49301400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:49292800-49301400	Weak transcription	GM12878-XiMat	blood
19	chr15:49292800-49308000	Weak transcription	Fetal Heart	heart
20	chr15:49292800-49308000	Weak transcription	Small Intestine	intestine
21	chr15:49297000-49309800	Strong transcription	Duodenum Mucosa	Duodenum
22	chr15:49297200-49305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:49297200-49305200	Strong transcription	Fetal Brain Female	brain
24	chr15:49297200-49305400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:49297200-49306000	Strong transcription	Fetal Intestine Large	intestine
26	chr15:49297200-49310000	Strong transcription	Liver	Liver
27	chr15:49297400-49305400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:49297400-49310200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:49297600-49309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:49297800-49309800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:49298000-49304600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:49298000-49305200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr15:49298000-49305400	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:49298000-49305600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:49298000-49308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:49298000-49309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:49298200-49301400	Strong transcription	Colon Smooth Muscle	Colon
42	chr15:49298200-49301600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:49298200-49303200	Strong transcription	Ovary	ovary
44	chr15:49298200-49304800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:49298200-49304800	Strong transcription	Stomach Smooth Muscle	stomach
46	chr15:49298200-49305200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:49298200-49305200	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr15:49298200-49306800	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:49298200-49308800	Strong transcription	Fetal Thymus	thymus
50	chr15:49298200-49309600	Strong transcription	Primary T cells from cord blood	blood

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