Variant report

Variant	rs3743293
Chromosome Location	chr15:49325081-49325082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49323112..49327106-chr15:49329823..49333093,3	K562	blood:
2	chr15:48965804..48968222-chr15:49324146..49326400,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11070675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050556	0.95[AMR][1000 genomes]
rs17393601	0.93[JPT][hapmap]
rs28521891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268652	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66783972	0.85[ASN][1000 genomes]
rs72727206	0.84[AMR][1000 genomes]
rs72727208	0.84[AMR][1000 genomes]
rs72741937	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741938	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741941	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741944	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72741953	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72741957	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741958	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741962	0.84[AMR][1000 genomes]
rs73406119	0.92[ASN][1000 genomes]
rs8031610	0.81[JPT][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:49301400-49329000	Weak transcription	K562	blood
11	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
12	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:49308400-49327600	Weak transcription	Dnd41	blood
14	chr15:49308600-49326800	Weak transcription	Esophagus	oesophagus
15	chr15:49308600-49327000	Weak transcription	Gastric	stomach
16	chr15:49308800-49326800	Weak transcription	Fetal Thymus	thymus
17	chr15:49308800-49328200	Weak transcription	Small Intestine	intestine
18	chr15:49308800-49331800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:49308800-49334400	Weak transcription	Psoas Muscle	Psoas
20	chr15:49309200-49327600	Weak transcription	NHEK	skin
21	chr15:49310000-49328400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:49313400-49335000	Weak transcription	Pancreas	Pancrea
23	chr15:49313800-49336400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr15:49314200-49329000	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:49315200-49330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:49315800-49328600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:49316000-49327600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:49316600-49328200	Strong transcription	HSMM	muscle
29	chr15:49317000-49325400	Strong transcription	Liver	Liver
30	chr15:49317200-49329600	Strong transcription	Placenta	Placenta
31	chr15:49317600-49327400	Weak transcription	Stomach Mucosa	stomach
32	chr15:49317800-49330200	Strong transcription	Primary B cells from cord blood	blood
33	chr15:49318000-49329200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr15:49318200-49330000	Strong transcription	Primary T cells from cord blood	blood
35	chr15:49318800-49327200	Weak transcription	Fetal Brain Male	brain
36	chr15:49319200-49327000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:49319200-49329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:49319200-49334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:49319400-49329600	Weak transcription	Brain Germinal Matrix	brain
40	chr15:49320200-49336800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:49320800-49329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:49320800-49336400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr15:49321000-49325200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:49321000-49326400	Weak transcription	Hela-S3	cervix
45	chr15:49321000-49327000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:49321000-49327000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:49321000-49327000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr15:49321000-49327000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:49321000-49327400	Weak transcription	NHLF	lung
50	chr15:49321000-49327600	Weak transcription	GM12878-XiMat	blood

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