Variant report

Variant	rs72741957
Chromosome Location	chr15:49378111-49378112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49376062..49378863-chr15:49460544..49462985,2	K562	blood:
2	chr15:49377443..49379648-chr15:49384094..49385731,2	MCF-7	breast:
3	chr15:49370775..49373012-chr15:49376032..49378415,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction
ENSG00000264210	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11070675	0.95[AMR][1000 genomes]
rs11633566	0.92[ASN][1000 genomes]
rs12050556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17393601	0.93[ASN][1000 genomes]
rs28521891	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3743293	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61268652	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66783972	0.85[ASN][1000 genomes]
rs72727206	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72727208	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72727209	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72727210	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72727218	0.81[ASN][1000 genomes]
rs72727219	0.81[ASN][1000 genomes]
rs72741937	0.95[AMR][1000 genomes]
rs72741938	0.95[AMR][1000 genomes]
rs72741941	0.95[AMR][1000 genomes]
rs72741942	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741944	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741949	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72741953	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72741958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72741962	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:49375800-49378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:49376600-49397600	Weak transcription	NHLF	lung
7	chr15:49377200-49378400	Active TSS	Brain Hippocampus Middle	brain
8	chr15:49377400-49378400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr15:49377600-49378200	Active TSS	Brain Angular Gyrus	brain
10	chr15:49377600-49378200	Active TSS	Brain Cingulate Gyrus	brain
11	chr15:49377600-49378400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr15:49377600-49378400	Active TSS	Brain Anterior Caudate	brain
13	chr15:49377600-49378600	Enhancers	Brain Germinal Matrix	brain
14	chr15:49377800-49378400	Active TSS	Brain Substantia Nigra	brain
15	chr15:49377800-49378400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:49377800-49378400	Enhancers	Placenta	Placenta
17	chr15:49378000-49378400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:49378000-49378400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr15:49378000-49378400	Enhancers	HepG2	liver
20	chr15:49378000-49379000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:49378000-49379400	Enhancers	Fetal Lung	lung

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