Variant report

Variant	rs28522399
Chromosome Location	chr8:102835274-102835275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1073027	1.00[ASN][1000 genomes]
rs1113543	1.00[ASN][1000 genomes]
rs16868425	0.81[ASN][1000 genomes]
rs16868426	0.81[ASN][1000 genomes]
rs16868430	0.84[ASN][1000 genomes]
rs16868487	1.00[ASN][1000 genomes]
rs28509417	0.80[AFR][1000 genomes]
rs28630444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28751936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56891389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102830200-102835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:102830200-102836400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:102830600-102835800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:102830800-102835800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:102832000-102835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:102832200-102843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:102832400-102836000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:102833600-102835600	Enhancers	Aorta	Aorta
10	chr8:102833600-102838000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr8:102834600-102837400	Enhancers	Fetal Muscle Leg	muscle
12	chr8:102834600-102837600	Enhancers	Ovary	ovary
13	chr8:102834800-102835800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:102834800-102837200	Enhancers	Brain Hippocampus Middle	brain
15	chr8:102834800-102843800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102835000-102836000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:102835000-102837600	Weak transcription	Left Ventricle	heart
18	chr8:102835000-102844400	Weak transcription	Psoas Muscle	Psoas
19	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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