Variant report

Variant	rs1113543
Chromosome Location	chr8:102825812-102825813
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10110736	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1073027	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10955272	0.84[AMR][1000 genomes]
rs10955273	0.84[AMR][1000 genomes]
rs16868341	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs16868354	0.82[JPT][hapmap]
rs16868359	1.00[ASW][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16868362	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap]
rs16868373	0.81[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16868374	0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs16868417	1.00[ASW][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs16868423	0.83[GIH][hapmap]
rs16868425	0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs16868426	1.00[ASW][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16868430	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16868487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28522399	1.00[ASN][1000 genomes]
rs28630444	0.98[ASN][1000 genomes]
rs28751936	1.00[ASN][1000 genomes]
rs56891389	1.00[ASN][1000 genomes]
rs56907672	0.84[AMR][1000 genomes]
rs57368614	0.84[AMR][1000 genomes]
rs60677697	0.84[AMR][1000 genomes]
rs6984466	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs73699584	0.84[AMR][1000 genomes]
rs73699930	0.84[AMR][1000 genomes]
rs73699931	0.80[AMR][1000 genomes]
rs73699933	0.80[AMR][1000 genomes]
rs73699935	0.84[AMR][1000 genomes]
rs73699938	0.84[AMR][1000 genomes]
rs9642973	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102817800-102829400	Weak transcription	Ovary	ovary
3	chr8:102825000-102829000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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