Variant report

Variant	rs16868362
Chromosome Location	chr8:102772049-102772050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102767254..102769678-chr8:102771935..102774760,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10108160	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10110736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1073027	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap]
rs10955272	0.85[ASN][1000 genomes]
rs10955273	0.85[ASN][1000 genomes]
rs1111932	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1113543	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap]
rs16868341	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868359	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16868373	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs16868374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868417	0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[ASN][1000 genomes]
rs16868423	0.89[GIH][hapmap]
rs16868425	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs16868426	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs16868430	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs16868487	0.82[JPT][hapmap]
rs56907672	1.00[ASN][1000 genomes]
rs57368614	1.00[ASN][1000 genomes]
rs57711234	0.82[ASN][1000 genomes]
rs58241619	0.98[ASN][1000 genomes]
rs58303849	0.87[ASN][1000 genomes]
rs60677697	1.00[ASN][1000 genomes]
rs6984466	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs73275514	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699584	1.00[ASN][1000 genomes]
rs73699930	1.00[ASN][1000 genomes]
rs73699931	1.00[ASN][1000 genomes]
rs73699933	1.00[ASN][1000 genomes]
rs73699935	1.00[ASN][1000 genomes]
rs73699938	1.00[ASN][1000 genomes]
rs9642973	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102761400-102781000	Weak transcription	Liver	Liver
2	chr8:102768800-102772200	Weak transcription	Aorta	Aorta
3	chr8:102768800-102772200	Weak transcription	Lung	lung
4	chr8:102769000-102772200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:102769000-102774800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:102770200-102774200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:102770200-102774200	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:102770200-102774200	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:102770400-102772600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:102770400-102772800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:102770400-102772800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:102770400-102773800	Enhancers	Right Atrium	heart
14	chr8:102770400-102774000	Enhancers	Brain Angular Gyrus	brain
15	chr8:102770400-102774000	Enhancers	Brain Substantia Nigra	brain
16	chr8:102770400-102774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:102770400-102774200	Enhancers	Fetal Stomach	stomach
18	chr8:102770400-102774400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr8:102770600-102773600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr8:102770600-102786800	Weak transcription	Esophagus	oesophagus
21	chr8:102770800-102774000	Enhancers	Adipose Nuclei	Adipose
22	chr8:102770800-102774400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:102771000-102772600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:102771000-102772600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:102771000-102773400	Enhancers	Fetal Heart	heart
26	chr8:102771000-102774200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:102771200-102772200	Weak transcription	Brain Anterior Caudate	brain
28	chr8:102771200-102772800	Enhancers	Brain Germinal Matrix	brain
29	chr8:102771200-102773600	Enhancers	HMEC	breast
30	chr8:102771200-102774200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr8:102771200-102774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:102771200-102775000	Enhancers	Fetal Muscle Leg	muscle
33	chr8:102771400-102772200	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr8:102771400-102774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:102771400-102774200	Enhancers	Fetal Lung	lung
36	chr8:102771400-102774600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:102771600-102772600	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr8:102771600-102772600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr8:102771600-102772800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr8:102771600-102773400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:102771600-102773600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:102771600-102773600	Enhancers	Pancreas	Pancrea
43	chr8:102771600-102773800	Enhancers	Brain Hippocampus Middle	brain
44	chr8:102771600-102774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:102771600-102774000	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr8:102771600-102774400	Enhancers	Colon Smooth Muscle	Colon
47	chr8:102771600-102774400	Enhancers	Psoas Muscle	Psoas
48	chr8:102771800-102772200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr8:102771800-102772400	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr8:102771800-102773600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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