Variant report

Variant	rs73275514
Chromosome Location	chr8:102769954-102769955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102762167..102765606-chr8:102768748..102771183,3	MCF-7	breast:
2	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10108160	0.88[ASN][1000 genomes]
rs10110736	0.98[ASN][1000 genomes]
rs10955272	0.85[ASN][1000 genomes]
rs10955273	0.85[ASN][1000 genomes]
rs1111932	0.88[ASN][1000 genomes]
rs16868341	1.00[ASN][1000 genomes]
rs16868354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868359	1.00[ASN][1000 genomes]
rs16868362	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868373	0.98[ASN][1000 genomes]
rs16868374	0.98[ASN][1000 genomes]
rs16868417	0.95[ASN][1000 genomes]
rs16868425	0.96[ASN][1000 genomes]
rs16868426	0.96[ASN][1000 genomes]
rs16868430	0.93[ASN][1000 genomes]
rs56907672	1.00[ASN][1000 genomes]
rs57368614	1.00[ASN][1000 genomes]
rs57711234	0.82[ASN][1000 genomes]
rs58241619	0.98[ASN][1000 genomes]
rs58303849	0.87[ASN][1000 genomes]
rs60677697	1.00[ASN][1000 genomes]
rs6984466	0.95[ASN][1000 genomes]
rs73699584	1.00[ASN][1000 genomes]
rs73699930	1.00[ASN][1000 genomes]
rs73699931	1.00[ASN][1000 genomes]
rs73699933	1.00[ASN][1000 genomes]
rs73699935	1.00[ASN][1000 genomes]
rs73699938	1.00[ASN][1000 genomes]
rs9642973	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431444	chr8:102766776-102770974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
2	chr8:102761400-102781000	Weak transcription	Liver	Liver
3	chr8:102765000-102770400	Weak transcription	Ovary	ovary
4	chr8:102765400-102770000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102768800-102770200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:102768800-102770200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:102768800-102770400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:102768800-102770400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:102768800-102770600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102768800-102772000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:102768800-102772000	Weak transcription	Fetal Kidney	kidney
12	chr8:102768800-102772000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:102768800-102772000	Weak transcription	K562	blood
14	chr8:102768800-102772200	Weak transcription	Aorta	Aorta
15	chr8:102768800-102772200	Weak transcription	Lung	lung
16	chr8:102769000-102770400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:102769000-102770400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:102769000-102771000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:102769000-102771000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:102769000-102771400	Weak transcription	Fetal Lung	lung
21	chr8:102769000-102771800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr8:102769000-102772200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:102769000-102774800	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr8:102769200-102771200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:102769200-102771200	Weak transcription	Fetal Muscle Leg	muscle
26	chr8:102769200-102771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr8:102769200-102772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr8:102769200-102772000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:102769400-102770400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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