Variant report

Variant	rs16868430
Chromosome Location	chr8:102797997-102797998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102791686..102794571-chr8:102795797..102798872,3	MCF-7	breast:
2	chr8:102793506..102795594-chr8:102796708..102798852,2	K562	blood:
3	chr8:102796504..102798716-chr8:102801614..102804455,2	MCF-7	breast:
4	chr8:102787314..102791567-chr8:102794884..102798267,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10108160	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs10110736	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs1073027	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10955272	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10955273	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1111932	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs1113543	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16868341	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16868354	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs16868359	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16868362	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs16868373	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16868374	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16868417	0.90[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16868425	1.00[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs16868426	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16868487	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28522399	0.84[ASN][1000 genomes]
rs28630444	0.83[ASN][1000 genomes]
rs28751936	0.84[ASN][1000 genomes]
rs56891389	0.84[ASN][1000 genomes]
rs56907672	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57368614	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57711234	0.85[ASN][1000 genomes]
rs58241619	0.91[ASN][1000 genomes]
rs58303849	0.87[ASN][1000 genomes]
rs60677697	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6984466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs73275514	0.93[ASN][1000 genomes]
rs73699584	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73699930	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73699931	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73699933	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73699935	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73699938	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9642973	1.00[CHB][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:102777600-102798000	Weak transcription	Fetal Stomach	stomach
4	chr8:102780200-102799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102781600-102801000	Weak transcription	Liver	Liver
6	chr8:102783000-102799600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:102783600-102799400	Weak transcription	Adipose Nuclei	Adipose
8	chr8:102783600-102800800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102784000-102799000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:102784200-102802200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102787000-102798400	Weak transcription	Aorta	Aorta
12	chr8:102787400-102802400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:102787600-102798000	Weak transcription	Pancreas	Pancrea
14	chr8:102787800-102802600	Weak transcription	Right Ventricle	heart
15	chr8:102790600-102802400	Weak transcription	Left Ventricle	heart
16	chr8:102790600-102802600	Weak transcription	Psoas Muscle	Psoas
17	chr8:102795000-102798000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:102795200-102803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:102795600-102798000	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:102795600-102799000	Genic enhancers	Fetal Muscle Leg	muscle
21	chr8:102796200-102798200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:102796200-102799200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:102796400-102803000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:102796600-102798000	Weak transcription	Ovary	ovary
25	chr8:102796600-102800000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:102796800-102802400	Weak transcription	NHDF-Ad	bronchial
27	chr8:102797000-102799600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr8:102797800-102798200	Weak transcription	GM12878-XiMat	blood
29	chr8:102797800-102798600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:102797800-102799400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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