Variant report

Variant	rs60677697
Chromosome Location	chr8:102763402-102763403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102762167..102765606-chr8:102768748..102771183,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10108160	0.88[ASN][1000 genomes]
rs10110736	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10955272	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10955273	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1111932	0.88[ASN][1000 genomes]
rs1113543	0.84[AMR][1000 genomes]
rs16868341	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868354	1.00[ASN][1000 genomes]
rs16868359	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868362	1.00[ASN][1000 genomes]
rs16868373	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868374	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868417	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16868425	0.96[ASN][1000 genomes]
rs16868426	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16868430	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56907672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57368614	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57711234	0.82[ASN][1000 genomes]
rs58241619	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58303849	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6984466	0.95[ASN][1000 genomes]
rs73275514	1.00[ASN][1000 genomes]
rs73699584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699930	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699931	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699933	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699938	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9642973	0.98[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
6	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
7	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
8	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
9	chr8:102757000-102763800	Weak transcription	Brain Anterior Caudate	brain
10	chr8:102757200-102764400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:102759400-102763800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:102761400-102781000	Weak transcription	Liver	Liver
14	chr8:102761800-102763800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:102762800-102763800	Weak transcription	Lung	lung
16	chr8:102763000-102763600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:102763000-102764200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:102763200-102763600	Weak transcription	Adipose Nuclei	Adipose
19	chr8:102763200-102763800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:102763200-102763800	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:102763200-102764600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr8:102763200-102766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:102763400-102764400	Enhancers	Ovary	ovary
26	chr8:102763400-102764600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:102763400-102765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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