Variant report

Variant	rs16868341
Chromosome Location	chr8:102764857-102764858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102759103..102761260-chr8:102764517..102767172,2	MCF-7	breast:
2	chr8:102762167..102765606-chr8:102768748..102771183,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10108160	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10110736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1073027	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs10955272	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10955273	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1111932	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1113543	0.81[CHB][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes]
rs16868354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868359	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868362	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868417	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16868425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16868426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16868430	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16868487	0.82[JPT][hapmap]
rs56907672	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57368614	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57711234	0.82[ASN][1000 genomes]
rs58241619	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58303849	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60677697	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6984466	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs73275514	1.00[ASN][1000 genomes]
rs73699584	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699930	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699931	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699933	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699935	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699938	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9642973	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
6	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
7	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
8	chr8:102759800-102767800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:102761400-102781000	Weak transcription	Liver	Liver
10	chr8:102763200-102766800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:102763200-102768400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:102763200-102768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:102763400-102765200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:102763600-102767600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102763800-102765000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102764200-102765400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:102764200-102765800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:102764200-102768400	Weak transcription	Lung	lung
19	chr8:102764400-102768200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:102764600-102765000	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr8:102764800-102765000	Enhancers	Ovary	ovary

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