Variant report

Variant	rs16868487
Chromosome Location	chr8:102832016-102832017
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10110736	0.82[JPT][hapmap]
rs1073027	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1113543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868341	0.82[JPT][hapmap]
rs16868359	0.82[JPT][hapmap]
rs16868362	0.82[JPT][hapmap]
rs16868373	0.82[JPT][hapmap]
rs16868374	0.82[JPT][hapmap]
rs16868417	0.82[JPT][hapmap]
rs16868425	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16868426	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16868430	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs28522399	1.00[ASN][1000 genomes]
rs28630444	0.98[ASN][1000 genomes]
rs28751936	1.00[ASN][1000 genomes]
rs56891389	1.00[ASN][1000 genomes]
rs6984466	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102828400-102832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102829600-102834600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102830200-102834800	Weak transcription	Brain Hippocampus Middle	brain
5	chr8:102830200-102835400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:102830200-102836400	Weak transcription	Brain Angular Gyrus	brain
7	chr8:102830400-102832400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:102830600-102835800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:102830800-102833600	Weak transcription	Aorta	Aorta
10	chr8:102830800-102834600	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:102830800-102834600	Weak transcription	Ovary	ovary
12	chr8:102830800-102835800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:102831800-102832400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:102831800-102832600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:102832000-102832200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:102832000-102832200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:102832000-102832200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr8:102832000-102832400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:102832000-102832400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr8:102832000-102835600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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