Variant report

Variant	rs1073027
Chromosome Location	chr8:102837572-102837573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10110736	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1113543	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868341	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16868354	0.82[JPT][hapmap]
rs16868359	0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap]
rs16868362	0.81[CHB][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap]
rs16868373	0.81[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap]
rs16868374	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16868417	0.90[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap]
rs16868423	0.83[GIH][hapmap]
rs16868425	0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs16868426	0.81[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs16868430	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs16868487	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28522399	1.00[ASN][1000 genomes]
rs28630444	0.98[ASN][1000 genomes]
rs28751936	1.00[ASN][1000 genomes]
rs56891389	1.00[ASN][1000 genomes]
rs6984466	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs9642973	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102832200-102843800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:102833600-102838000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:102834600-102837600	Enhancers	Ovary	ovary
5	chr8:102834800-102843800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:102835000-102837600	Weak transcription	Left Ventricle	heart
7	chr8:102835000-102844400	Weak transcription	Psoas Muscle	Psoas
8	chr8:102835000-102852000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:102835800-102839200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:102835800-102839400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:102836200-102844400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:102836600-102844000	Weak transcription	Fetal Heart	heart
13	chr8:102836600-102844200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:102836800-102843800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:102837200-102837800	Strong transcription	Aorta	Aorta
16	chr8:102837200-102837800	Enhancers	Right Atrium	heart
17	chr8:102837200-102844000	Weak transcription	Brain Angular Gyrus	brain
18	chr8:102837400-102837800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102837400-102837800	Enhancers	Lung	lung
20	chr8:102837400-102838000	Genic enhancers	Fetal Muscle Leg	muscle

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