Variant report

Variant	rs16868359
Chromosome Location	chr8:102771240-102771241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10108160	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs10110736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1073027	0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap]
rs10955272	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10955273	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1111932	0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs1113543	1.00[ASW][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16868341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868354	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs16868373	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16868417	1.00[ASW][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16868423	0.89[GIH][hapmap]
rs16868425	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[ASN][1000 genomes]
rs16868426	1.00[ASW][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16868430	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16868487	0.82[JPT][hapmap]
rs56907672	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57368614	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57711234	0.82[ASN][1000 genomes]
rs58241619	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58303849	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60677697	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6984466	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs73275514	1.00[ASN][1000 genomes]
rs73699584	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699930	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699931	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699933	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699935	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73699938	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9642973	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102761400-102781000	Weak transcription	Liver	Liver
2	chr8:102768800-102772000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:102768800-102772000	Weak transcription	Fetal Kidney	kidney
4	chr8:102768800-102772000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:102768800-102772000	Weak transcription	K562	blood
6	chr8:102768800-102772200	Weak transcription	Aorta	Aorta
7	chr8:102768800-102772200	Weak transcription	Lung	lung
8	chr8:102769000-102771400	Weak transcription	Fetal Lung	lung
9	chr8:102769000-102771800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:102769000-102772200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:102769000-102774800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr8:102769200-102771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:102769200-102772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:102769200-102772000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:102770200-102774200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:102770200-102774200	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:102770200-102774200	Enhancers	Rectal Smooth Muscle	rectum
19	chr8:102770400-102771400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102770400-102772600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102770400-102772800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:102770400-102772800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:102770400-102773800	Enhancers	Right Atrium	heart
24	chr8:102770400-102774000	Enhancers	Brain Angular Gyrus	brain
25	chr8:102770400-102774000	Enhancers	Brain Substantia Nigra	brain
26	chr8:102770400-102774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:102770400-102774200	Enhancers	Fetal Stomach	stomach
28	chr8:102770400-102774400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:102770600-102771800	Weak transcription	Left Ventricle	heart
30	chr8:102770600-102773600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr8:102770600-102786800	Weak transcription	Esophagus	oesophagus
32	chr8:102770800-102771600	Weak transcription	Colon Smooth Muscle	Colon
33	chr8:102770800-102772000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr8:102770800-102774000	Enhancers	Adipose Nuclei	Adipose
35	chr8:102770800-102774400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:102771000-102771600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:102771000-102771800	Weak transcription	Ovary	ovary
38	chr8:102771000-102772600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:102771000-102772600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:102771000-102773400	Enhancers	Fetal Heart	heart
41	chr8:102771000-102774200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:102771200-102771400	Enhancers	Fetal Intestine Large	intestine
43	chr8:102771200-102771600	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr8:102771200-102771600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:102771200-102771600	Weak transcription	Pancreas	Pancrea
46	chr8:102771200-102772200	Weak transcription	Brain Anterior Caudate	brain
47	chr8:102771200-102772800	Enhancers	Brain Germinal Matrix	brain
48	chr8:102771200-102773600	Enhancers	HMEC	breast
49	chr8:102771200-102774200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr8:102771200-102774600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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