Variant report

Variant	rs9642973
Chromosome Location	chr8:102776428-102776429
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10108160	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10110736	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs1073027	0.81[CHB][hapmap]
rs10955272	0.84[ASN][1000 genomes]
rs10955273	0.84[ASN][1000 genomes]
rs1111932	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1113543	0.81[CHB][hapmap]
rs16868341	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868354	1.00[CHB][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868356	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16868359	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868362	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868373	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868374	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868417	0.90[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs16868423	1.00[CEU][hapmap]
rs16868425	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868426	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs16868430	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs56008120	1.00[EUR][1000 genomes]
rs56907672	0.98[ASN][1000 genomes]
rs57368614	0.98[ASN][1000 genomes]
rs57711234	0.84[ASN][1000 genomes]
rs58181251	0.83[EUR][1000 genomes]
rs58241619	0.96[ASN][1000 genomes]
rs58303849	0.89[ASN][1000 genomes]
rs59573144	0.83[EUR][1000 genomes]
rs60235320	1.00[EUR][1000 genomes]
rs60677697	0.98[ASN][1000 genomes]
rs61460942	1.00[EUR][1000 genomes]
rs61534404	1.00[EUR][1000 genomes]
rs6984466	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs6986790	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73275514	0.98[ASN][1000 genomes]
rs73699584	0.98[ASN][1000 genomes]
rs73699930	0.98[ASN][1000 genomes]
rs73699931	0.98[ASN][1000 genomes]
rs73699933	0.98[ASN][1000 genomes]
rs73699935	0.98[ASN][1000 genomes]
rs73699938	0.98[ASN][1000 genomes]
rs73699960	1.00[EUR][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102761400-102781000	Weak transcription	Liver	Liver
2	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102770600-102786800	Weak transcription	Esophagus	oesophagus
4	chr8:102772800-102778800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:102772800-102783400	Weak transcription	Aorta	Aorta
6	chr8:102772800-102786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:102773600-102776600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:102773600-102776600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:102773600-102776800	Weak transcription	NHEK	skin
10	chr8:102773800-102776800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:102773800-102776800	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:102773800-102777400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:102774000-102776600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:102774000-102776600	Weak transcription	Brain Substantia Nigra	brain
15	chr8:102774000-102776600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:102774000-102776600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:102774200-102776800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:102774200-102777000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:102774200-102779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr8:102774200-102782000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:102774200-102782200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:102774200-102782200	Weak transcription	Brain Anterior Caudate	brain
23	chr8:102774200-102782600	Weak transcription	Fetal Kidney	kidney
24	chr8:102774200-102790200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:102774400-102776600	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:102774400-102777200	Weak transcription	Psoas Muscle	Psoas
27	chr8:102774400-102777800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102774600-102799600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr8:102775400-102781600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:102775600-102778000	Enhancers	Fetal Lung	lung
31	chr8:102775600-102781000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:102776000-102776800	Enhancers	Right Atrium	heart
33	chr8:102776000-102778400	Genic enhancers	Fetal Muscle Leg	muscle
34	chr8:102776000-102778400	Enhancers	Ovary	ovary
35	chr8:102776200-102776600	Enhancers	GM12878-XiMat	blood
36	chr8:102776200-102778200	Enhancers	Right Ventricle	heart
37	chr8:102776200-102778400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr8:102776400-102776800	Enhancers	HSMMtube	muscle
39	chr8:102776400-102777000	Weak transcription	Fetal Brain Male	brain
40	chr8:102776400-102777000	Enhancers	Left Ventricle	heart
41	chr8:102776400-102777600	Enhancers	Fetal Stomach	stomach
42	chr8:102776400-102777800	Enhancers	Brain Germinal Matrix	brain
43	chr8:102776400-102778000	Enhancers	Fetal Heart	heart
44	chr8:102776400-102778000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr8:102776400-102778200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links