Variant report

Variant	rs60235320
Chromosome Location	chr8:102806171-102806172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr8:102805825-102806199	GM12878	blood:	n/a	n/a
2	NFYB	chr8:102805751-102806257	GM12878	blood:	n/a	n/a
3	RCOR1	chr8:102805625-102806255	GM12878	blood:	n/a	n/a
4	ZEB1	chr8:102805967-102806289	GM12878	blood:	n/a	chr8:102806115-102806124 chr8:102806116-102806127
5	EBF1	chr8:102805920-102806220	GM12878	blood:	n/a	n/a
6	BCLAF1	chr8:102805713-102806209	GM12878	blood:	n/a	n/a
7	FOXM1	chr8:102805523-102806388	GM12878	blood:	n/a	n/a
8	PML	chr8:102805578-102806319	GM12878	blood:	n/a	n/a
9	MEF2C	chr8:102805594-102806444	GM12878	blood:	n/a	chr8:102805986-102806001 chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
10	BHLHE40	chr8:102805815-102806219	GM12878	blood:	n/a	n/a
11	BCL11A	chr8:102805699-102806277	GM12878	blood:	n/a	n/a
12	BATF	chr8:102805699-102806243	GM12878	blood:	n/a	chr8:102805940-102805949
13	CUX1	chr8:102805728-102806183	GM12878	blood:	n/a	n/a
14	EP300	chr8:102805714-102806272	GM12878	blood:	n/a	chr8:102805737-102805746
15	RAD21	chr8:102806008-102806240	GM12878	blood:	n/a	n/a
16	MTA3	chr8:102805725-102806295	GM12878	blood:	n/a	n/a
17	RUNX3	chr8:102805618-102806350	GM12878	blood:	n/a	n/a
18	TBL1XR1	chr8:102805713-102806277	GM12878	blood:	n/a	n/a
19	FOXM1	chr8:102805693-102806366	GM12878	blood:	n/a	n/a
20	NFIC	chr8:102805582-102806405	GM12878	blood:	n/a	n/a
21	STAT5A	chr8:102805824-102806235	GM12878	blood:	n/a	n/a
22	STAT5A	chr8:102805705-102806291	GM12878	blood:	n/a	n/a
23	TCF12	chr8:102805955-102806259	GM12878	blood:	n/a	n/a
24	TCF12	chr8:102805946-102806282	GM12878	blood:	n/a	n/a
25	ATF2	chr8:102805711-102806286	GM12878	blood:	n/a	n/a
26	BCLAF1	chr8:102805572-102806327	GM12878	blood:	n/a	n/a
27	TCF3	chr8:102805916-102806299	GM12878	blood:	n/a	n/a
28	RUNX3	chr8:102805492-102806370	GM12878	blood:	n/a	n/a
29	NFIC	chr8:102805509-102806424	GM12878	blood:	n/a	n/a
30	NFATC1	chr8:102805614-102806293	GM12878	blood:	n/a	n/a
31	MTA3	chr8:102805525-102806411	GM12878	blood:	n/a	n/a
32	ATF2	chr8:102805572-102806356	GM12878	blood:	n/a	n/a
33	EP300	chr8:102805774-102806235	GM12878	blood:	n/a	n/a
34	MEF2A	chr8:102805459-102806382	GM12878	blood:	n/a	chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
35	CEBPB	chr8:102805580-102806403	GM12878	blood:	n/a	n/a
36	MXI1	chr8:102805777-102806228	GM12878	blood:	n/a	n/a
37	BCL11A	chr8:102805949-102806208	GM12878	blood:	n/a	n/a
38	WRNIP1	chr8:102806110-102806198	GM12878	blood:	n/a	n/a
39	MEF2C	chr8:102805777-102806237	GM12878	blood:	n/a	chr8:102805986-102806001 chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
40	BCL3	chr8:102805679-102806288	GM12878	blood:	n/a	n/a
41	SMC3	chr8:102805723-102806306	GM12878	blood:	n/a	n/a
42	MEF2A	chr8:102805516-102806376	GM12878	blood:	n/a	chr8:102806040-102806056 chr8:102806039-102806060 chr8:102805988-102806002 chr8:102806044-102806053 chr8:102806041-102806056 chr8:102805974-102805989
43	NFATC1	chr8:102805714-102806314	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102805837..102808016-chr8:102809484..102812938,3	MCF-7	breast:

Variant related genes	Relation type
NCALD	TF binding region

rs_ID	r²[population]
rs10108160	1.00[EUR][1000 genomes]
rs1111932	1.00[EUR][1000 genomes]
rs16868356	1.00[EUR][1000 genomes]
rs56008120	1.00[EUR][1000 genomes]
rs58181251	0.83[EUR][1000 genomes]
rs59573144	0.83[EUR][1000 genomes]
rs61460942	1.00[EUR][1000 genomes]
rs61534404	1.00[EUR][1000 genomes]
rs6986790	1.00[EUR][1000 genomes]
rs73699653	0.88[AFR][1000 genomes]
rs73699960	1.00[EUR][1000 genomes]
rs9642973	1.00[EUR][1000 genomes]

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803200-102817800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:102804200-102807400	Weak transcription	Fetal Brain Male	brain
4	chr8:102805600-102806600	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:102806000-102806200	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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