Variant report

Variant	rs16868356
Chromosome Location	chr8:102770464-102770465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102762167..102765606-chr8:102768748..102771183,3	MCF-7	breast:
2	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10108160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1111932	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11998728	1.00[CHB][hapmap]
rs16868083	1.00[JPT][hapmap]
rs16868366	0.83[ASN][1000 genomes]
rs16868423	1.00[CEU][hapmap]
rs16868515	1.00[CHB][hapmap]
rs16868516	1.00[CHB][hapmap]
rs3735719	0.83[ASN][1000 genomes]
rs4507732	1.00[JPT][hapmap]
rs56008120	1.00[EUR][1000 genomes]
rs58181251	0.83[EUR][1000 genomes]
rs58196146	0.83[ASN][1000 genomes]
rs59573144	0.83[EUR][1000 genomes]
rs60235320	1.00[EUR][1000 genomes]
rs61460942	1.00[EUR][1000 genomes]
rs61534404	1.00[EUR][1000 genomes]
rs6986790	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73277018	0.83[ASN][1000 genomes]
rs73698849	0.83[ASN][1000 genomes]
rs73699960	1.00[EUR][1000 genomes]
rs9642973	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431444	chr8:102766776-102770974	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
2	chr8:102761400-102781000	Weak transcription	Liver	Liver
3	chr8:102768800-102770600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:102768800-102772000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:102768800-102772000	Weak transcription	Fetal Kidney	kidney
6	chr8:102768800-102772000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:102768800-102772000	Weak transcription	K562	blood
8	chr8:102768800-102772200	Weak transcription	Aorta	Aorta
9	chr8:102768800-102772200	Weak transcription	Lung	lung
10	chr8:102769000-102771000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:102769000-102771000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:102769000-102771400	Weak transcription	Fetal Lung	lung
13	chr8:102769000-102771800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:102769000-102772200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr8:102769000-102774800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr8:102769200-102771200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:102769200-102771200	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:102769200-102771800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr8:102769200-102772000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr8:102769200-102772000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:102769600-102803000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:102770200-102771200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr8:102770200-102771200	Enhancers	Pancreas	Pancrea
24	chr8:102770200-102774200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:102770200-102774200	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:102770200-102774200	Enhancers	Rectal Smooth Muscle	rectum
27	chr8:102770400-102770600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102770400-102770600	Enhancers	Esophagus	oesophagus
29	chr8:102770400-102770600	Enhancers	Left Ventricle	heart
30	chr8:102770400-102770800	Enhancers	Colon Smooth Muscle	Colon
31	chr8:102770400-102771000	Enhancers	Ovary	ovary
32	chr8:102770400-102771200	Enhancers	Brain Hippocampus Middle	brain
33	chr8:102770400-102771400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:102770400-102772600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr8:102770400-102772800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr8:102770400-102772800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:102770400-102773800	Enhancers	Right Atrium	heart
38	chr8:102770400-102774000	Enhancers	Brain Angular Gyrus	brain
39	chr8:102770400-102774000	Enhancers	Brain Substantia Nigra	brain
40	chr8:102770400-102774200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr8:102770400-102774200	Enhancers	Fetal Stomach	stomach
42	chr8:102770400-102774400	Enhancers	Cortex derived primary cultured neurospheres	brain

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