Variant report

Variant	rs6986790
Chromosome Location	chr8:102756602-102756603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102755506..102757856-chr8:102767711..102770517,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10108160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1111932	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11998728	1.00[CHB][hapmap]
rs16868356	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16868366	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16868423	1.00[CEU][hapmap]
rs16868515	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs16868516	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs3735719	1.00[ASN][1000 genomes]
rs56008120	1.00[EUR][1000 genomes]
rs58181251	0.83[EUR][1000 genomes]
rs58196146	1.00[ASN][1000 genomes]
rs59573144	0.83[EUR][1000 genomes]
rs60235320	1.00[EUR][1000 genomes]
rs61460942	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61534404	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73277018	1.00[ASN][1000 genomes]
rs73277026	0.83[ASN][1000 genomes]
rs73277033	0.83[ASN][1000 genomes]
rs73698849	1.00[ASN][1000 genomes]
rs73699960	1.00[EUR][1000 genomes]
rs9642973	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102732000-102762400	Weak transcription	Lung	lung
3	chr8:102735000-102760600	Weak transcription	Liver	Liver
4	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
5	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
9	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:102746400-102758000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:102746600-102763800	Weak transcription	Left Ventricle	heart
14	chr8:102746600-102771000	Weak transcription	Fetal Heart	heart
15	chr8:102747600-102768400	Weak transcription	Fetal Kidney	kidney
16	chr8:102750200-102757600	Weak transcription	Ovary	ovary
17	chr8:102750400-102757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:102751200-102757000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:102753400-102756800	Weak transcription	GM12878-XiMat	blood
20	chr8:102753400-102761800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:102755800-102758000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr8:102756000-102757200	Genic enhancers	Fetal Muscle Leg	muscle
23	chr8:102756000-102758000	Enhancers	Psoas Muscle	Psoas
24	chr8:102756000-102762000	Weak transcription	Adipose Nuclei	Adipose
25	chr8:102756200-102757000	Enhancers	Placenta Amnion	Placenta Amnion
26	chr8:102756200-102763200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr8:102756400-102768600	Weak transcription	Aorta	Aorta
28	chr8:102756600-102757200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:102756600-102758400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:102756600-102758400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr8:102756600-102759400	Weak transcription	Rectal Smooth Muscle	rectum

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