Variant report

Variant	rs61460942
Chromosome Location	chr8:102858487-102858488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102849681..102851432-chr8:102857073..102859191,2	MCF-7	breast:
2	chr8:102857484..102859004-chr8:102860794..102863721,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10108160	1.00[EUR][1000 genomes]
rs1111932	1.00[EUR][1000 genomes]
rs16868356	1.00[EUR][1000 genomes]
rs16868366	0.83[ASN][1000 genomes]
rs16868515	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16868516	1.00[ASN][1000 genomes]
rs3735719	0.83[ASN][1000 genomes]
rs56008120	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58181251	0.83[EUR][1000 genomes]
rs58196146	0.83[ASN][1000 genomes]
rs59573144	0.83[EUR][1000 genomes]
rs60235320	1.00[EUR][1000 genomes]
rs61534404	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6986790	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73277018	0.83[ASN][1000 genomes]
rs73277026	1.00[ASN][1000 genomes]
rs73277033	1.00[ASN][1000 genomes]
rs73280806	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73280809	0.88[AMR][1000 genomes]
rs73280812	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73698849	0.83[ASN][1000 genomes]
rs73699960	1.00[EUR][1000 genomes]
rs9642973	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv518162	chr8:102841031-102893626	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv523850	chr8:102841031-102893626	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102803600-102870600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:102845400-102862000	Weak transcription	Left Ventricle	heart
3	chr8:102846800-102866400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:102854800-102866200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:102855200-102862400	Weak transcription	Aorta	Aorta
6	chr8:102857600-102858600	Weak transcription	GM12878-XiMat	blood

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