Variant report

Variant	rs28543997
Chromosome Location	chr15:34610577-34610578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10152189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10152222	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10152351	0.90[AFR][1000 genomes]
rs10152407	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10162625	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10467958	0.92[AFR][1000 genomes]
rs10467959	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10468070	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324422	0.90[AFR][1000 genomes]
rs12324469	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13379654	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13380356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13380366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16958911	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16958950	0.94[AFR][1000 genomes]
rs2615359	1.00[EUR][1000 genomes]
rs2705349	1.00[EUR][1000 genomes]
rs2705350	1.00[EUR][1000 genomes]
rs28442188	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28608058	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28664278	0.83[AFR][1000 genomes]
rs28762482	0.94[AFR][1000 genomes]
rs28807170	0.94[AFR][1000 genomes]
rs28857572	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28871951	0.94[AFR][1000 genomes]
rs347815	1.00[EUR][1000 genomes]
rs56964418	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57044113	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57573060	0.90[AFR][1000 genomes]
rs58198195	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59662878	0.94[AFR][1000 genomes]
rs60708162	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61659679	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6495649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495651	0.94[AFR][1000 genomes]
rs6495652	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495653	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495657	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6495658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165738	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7165973	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7166559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167363	0.90[AFR][1000 genomes]
rs7167379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168029	0.90[AFR][1000 genomes]
rs7168168	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168361	0.94[AFR][1000 genomes]
rs7168606	0.90[AFR][1000 genomes]
rs7168707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170829	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175327	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175736	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7183736	0.90[AFR][1000 genomes]
rs8023999	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8024424	0.98[AFR][1000 genomes]
rs8024443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8026499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8029788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030737	0.90[AFR][1000 genomes]
rs8032579	0.94[AFR][1000 genomes]
rs8033545	0.88[AFR][1000 genomes]
rs8035044	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036094	0.84[AFR][1000 genomes]
rs8038493	0.90[AFR][1000 genomes]
rs8039233	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8039356	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9806767	0.98[AFR][1000 genomes]
rs9806778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9989297	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34583800-34610600	Weak transcription	Pancreas	Pancrea
2	chr15:34585000-34610600	Weak transcription	Lung	lung
3	chr15:34585200-34615600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:34589800-34610600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:34590000-34610600	Weak transcription	Small Intestine	intestine
6	chr15:34593000-34610600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:34594000-34610600	Weak transcription	Gastric	stomach
8	chr15:34598600-34610800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34600600-34610600	Weak transcription	Psoas Muscle	Psoas
10	chr15:34602400-34610600	Weak transcription	Esophagus	oesophagus
11	chr15:34604400-34610600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:34605600-34610800	Weak transcription	Brain Substantia Nigra	brain
13	chr15:34607400-34611600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:34607600-34610600	Weak transcription	Brain Angular Gyrus	brain
15	chr15:34608000-34611000	Active TSS	GM12878-XiMat	blood
16	chr15:34608400-34611400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:34608800-34611400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr15:34609000-34610800	Active TSS	Duodenum Mucosa	Duodenum
19	chr15:34609000-34611000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr15:34609000-34611400	Active TSS	Aorta	Aorta
21	chr15:34609400-34611000	Active TSS	Hela-S3	cervix
22	chr15:34609400-34611000	Active TSS	K562	blood
23	chr15:34609400-34611200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr15:34609400-34611400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr15:34609600-34611000	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr15:34609600-34611200	Active TSS	Right Ventricle	heart
27	chr15:34609600-34611400	Active TSS	Fetal Stomach	stomach
28	chr15:34609600-34611600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:34609800-34610800	Active TSS	Primary T cells fromperipheralblood	blood
30	chr15:34609800-34610800	Weak transcription	Spleen	Spleen
31	chr15:34610000-34610800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:34610000-34611400	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr15:34610000-34611400	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr15:34610000-34611400	Active TSS	Fetal Intestine Large	intestine
35	chr15:34610000-34611400	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr15:34610000-34611400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
37	chr15:34610000-34611600	Active TSS	Fetal Kidney	kidney
38	chr15:34610200-34610600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr15:34610200-34610600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr15:34610200-34610600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr15:34610200-34610600	Active TSS	Thymus	Thymus
42	chr15:34610200-34610800	Active TSS	Primary monocytes fromperipheralblood	blood
43	chr15:34610200-34610800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:34610200-34610800	Flanking Active TSS	Liver	Liver
45	chr15:34610200-34611000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr15:34610200-34611000	Active TSS	Right Atrium	heart
47	chr15:34610200-34611000	Active TSS	HMEC	breast
48	chr15:34610200-34611000	Active TSS	NHEK	skin
49	chr15:34610200-34611200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr15:34610200-34611200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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