Variant report

Variant	rs7168029
Chromosome Location	chr15:34555137-34555138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34553058..34555521-chr15:34561938..34565007,3	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10152189	0.94[AFR][1000 genomes]
rs10152222	0.98[AFR][1000 genomes]
rs10152351	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10152407	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10162625	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10467958	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10467959	0.94[AFR][1000 genomes]
rs10468070	0.94[AFR][1000 genomes]
rs12324422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12324469	0.98[AFR][1000 genomes]
rs13379654	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs13380356	0.90[AFR][1000 genomes]
rs13380366	0.90[AFR][1000 genomes]
rs16958911	0.98[AFR][1000 genomes]
rs16958950	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs28442188	0.98[AFR][1000 genomes]
rs28543997	0.90[AFR][1000 genomes]
rs28608058	0.94[AFR][1000 genomes]
rs28664278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28762482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28807170	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28857572	0.88[AFR][1000 genomes]
rs28871951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56964418	0.94[AFR][1000 genomes]
rs57044113	0.98[AFR][1000 genomes]
rs57573060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58198195	0.94[AFR][1000 genomes]
rs59662878	0.84[AFR][1000 genomes]
rs60708162	0.94[AFR][1000 genomes]
rs61659679	0.98[AFR][1000 genomes]
rs6495649	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6495650	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6495651	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6495652	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6495653	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6495654	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs6495655	0.90[AFR][1000 genomes]
rs6495656	0.90[AFR][1000 genomes]
rs6495657	0.90[AFR][1000 genomes]
rs6495658	0.90[AFR][1000 genomes]
rs6495659	0.86[AFR][1000 genomes]
rs7165738	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7165973	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7166559	0.90[AFR][1000 genomes]
rs7167363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7167379	0.86[AFR][1000 genomes]
rs7168168	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7168361	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7168606	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168707	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7169731	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169802	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7170829	0.94[AFR][1000 genomes]
rs7175327	0.94[AFR][1000 genomes]
rs7175736	0.94[AFR][1000 genomes]
rs7176138	0.94[AFR][1000 genomes]
rs7183736	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023999	0.98[AFR][1000 genomes]
rs8024424	0.92[AFR][1000 genomes]
rs8024443	0.90[AFR][1000 genomes]
rs8025075	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs8026499	0.94[AFR][1000 genomes]
rs8029788	0.90[AFR][1000 genomes]
rs8030737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8033545	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs8035044	0.94[AFR][1000 genomes]
rs8035650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8036094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039233	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs8039356	0.94[AFR][1000 genomes]
rs8040647	1.00[YRI][hapmap]
rs8042422	0.90[AFR][1000 genomes]
rs8042605	0.90[AFR][1000 genomes]
rs9806767	0.92[AFR][1000 genomes]
rs9806778	0.90[AFR][1000 genomes]
rs9989297	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1045173	chr15:34501055-34596995	Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34518000-34571800	Weak transcription	Stomach Mucosa	stomach
2	chr15:34520200-34555600	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr15:34533000-34555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:34533000-34556600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:34533000-34564000	Weak transcription	NHLF	lung
6	chr15:34533200-34557400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:34533200-34562800	Weak transcription	Pancreas	Pancrea
8	chr15:34543000-34568200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:34543200-34558800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:34544600-34559000	Weak transcription	A549	lung
11	chr15:34545400-34555400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:34546600-34555800	Weak transcription	Hela-S3	cervix
13	chr15:34546600-34556400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:34546800-34556400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:34546800-34556400	Weak transcription	Fetal Brain Female	brain
16	chr15:34546800-34556600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:34546800-34557000	Weak transcription	NHEK	skin
18	chr15:34546800-34567400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:34546800-34568000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:34546800-34569400	Weak transcription	Ovary	ovary
21	chr15:34546800-34571800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:34546800-34573800	Weak transcription	HUVEC	blood vessel
23	chr15:34547000-34556600	Weak transcription	Brain Angular Gyrus	brain
24	chr15:34547400-34562800	Weak transcription	HSMMtube	muscle
25	chr15:34547400-34564200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:34547600-34591200	Weak transcription	Aorta	Aorta
27	chr15:34547800-34555200	Enhancers	Fetal Heart	heart
28	chr15:34548200-34558800	Weak transcription	Fetal Stomach	stomach
29	chr15:34548200-34563800	Weak transcription	Osteobl	bone
30	chr15:34548200-34592600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:34548600-34565400	Weak transcription	Fetal Intestine Large	intestine
32	chr15:34548800-34556400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:34549200-34556800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:34549200-34563600	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:34549200-34567400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:34549200-34571200	Weak transcription	Left Ventricle	heart
37	chr15:34550000-34587400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr15:34550800-34556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:34551000-34558800	Weak transcription	HepG2	liver
40	chr15:34551000-34559400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr15:34551000-34562000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr15:34551000-34565600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:34551000-34567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:34551200-34555600	Strong transcription	Fetal Intestine Small	intestine
45	chr15:34551200-34556400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:34551200-34556600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:34551200-34565600	Weak transcription	Liver	Liver
48	chr15:34551200-34567400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:34551200-34569400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr15:34551200-34577000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links