Variant report

Variant	rs28575028
Chromosome Location	chr4:98061560-98061561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10031502	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115773	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13123053	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13140356	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28775982	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28869280	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34913398	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4074142	0.96[ASN][1000 genomes]
rs4078015	0.83[ASN][1000 genomes]
rs4078016	0.91[ASN][1000 genomes]
rs4426781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4627873	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6854176	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98058000-98062000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr4:98059000-98062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:98059800-98064600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:98060600-98062200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr4:98060800-98062400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:98061000-98062000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:98061000-98062000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:98061000-98062000	Enhancers	NHEK	skin
9	chr4:98061200-98065400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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