Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10031502	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13115773	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13123053	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13140356	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28575028	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28775982	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28869280	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34913398	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4074142	1.00[ASN][1000 genomes]
rs4075059	0.82[AFR][1000 genomes]
rs4078015	0.87[ASN][1000 genomes]
rs4078016	0.94[ASN][1000 genomes]
rs4301123	0.82[AFR][1000 genomes]
rs4599417	0.82[AFR][1000 genomes]
rs4627873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4699304	0.81[AFR][1000 genomes]
rs6854176	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6855655	0.82[AFR][1000 genomes]
rs7655573	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994700	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98059800-98064600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:98060600-98062200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:98060800-98062400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:98061200-98065400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:98061800-98062600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr4:98062000-98062200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
7	chr4:98062000-98062200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:98062000-98062600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:98062000-98063600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:98062000-98063800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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