Variant report

Variant	rs4078016
Chromosome Location	chr4:98053277-98053278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10005163	0.87[EUR][1000 genomes]
rs10010641	0.87[EUR][1000 genomes]
rs10014101	0.81[EUR][1000 genomes]
rs10031502	0.96[ASN][1000 genomes]
rs1018950	0.84[AMR][1000 genomes]
rs1018951	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11941794	0.83[EUR][1000 genomes]
rs13115773	0.92[ASN][1000 genomes]
rs13140356	0.94[ASN][1000 genomes]
rs17026349	0.87[EUR][1000 genomes]
rs17026376	0.87[EUR][1000 genomes]
rs17026379	0.87[EUR][1000 genomes]
rs28392183	0.84[EUR][1000 genomes]
rs28520218	0.87[EUR][1000 genomes]
rs28523751	0.87[EUR][1000 genomes]
rs28566869	0.84[EUR][1000 genomes]
rs28575028	0.91[ASN][1000 genomes]
rs28656993	0.87[EUR][1000 genomes]
rs2865774	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28775982	0.96[ASN][1000 genomes]
rs28804793	0.87[EUR][1000 genomes]
rs28835944	0.87[EUR][1000 genomes]
rs28869280	0.92[ASN][1000 genomes]
rs34913398	0.96[ASN][1000 genomes]
rs3960895	0.85[EUR][1000 genomes]
rs4074142	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4078015	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4145376	0.87[EUR][1000 genomes]
rs4292338	0.87[EUR][1000 genomes]
rs4426781	0.94[ASN][1000 genomes]
rs4434261	0.87[EUR][1000 genomes]
rs4615177	0.87[EUR][1000 genomes]
rs4624660	0.87[EUR][1000 genomes]
rs4627873	0.91[ASN][1000 genomes]
rs55649133	0.83[EUR][1000 genomes]
rs56403113	0.83[EUR][1000 genomes]
rs61220489	0.83[EUR][1000 genomes]
rs66604908	0.83[EUR][1000 genomes]
rs6828546	0.87[EUR][1000 genomes]
rs6837816	0.83[EUR][1000 genomes]
rs6854176	0.94[ASN][1000 genomes]
rs72674088	0.81[EUR][1000 genomes]
rs72674090	0.83[EUR][1000 genomes]
rs72674091	0.83[EUR][1000 genomes]
rs72674093	0.83[EUR][1000 genomes]
rs72676503	0.83[EUR][1000 genomes]
rs72676512	0.83[EUR][1000 genomes]
rs72676517	0.83[EUR][1000 genomes]
rs72676518	0.83[EUR][1000 genomes]
rs72676537	0.83[EUR][1000 genomes]
rs72676538	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72676541	0.83[EUR][1000 genomes]
rs72874647	0.87[EUR][1000 genomes]
rs72874648	0.87[EUR][1000 genomes]
rs72874649	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72874654	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72878989	0.81[EUR][1000 genomes]
rs72882340	0.87[EUR][1000 genomes]
rs72882341	0.87[EUR][1000 genomes]
rs72882343	0.87[EUR][1000 genomes]
rs7655573	0.94[ASN][1000 genomes]
rs7656650	0.87[EUR][1000 genomes]
rs7656873	0.87[EUR][1000 genomes]
rs7672661	0.87[EUR][1000 genomes]
rs7672690	0.87[EUR][1000 genomes]
rs7681234	0.87[EUR][1000 genomes]
rs9995442	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98051600-98055600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:98052600-98053400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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