Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10004925	0.86[AFR][1000 genomes]
rs10015575	0.86[AFR][1000 genomes]
rs10023781	0.85[AFR][1000 genomes]
rs10031310	0.86[AFR][1000 genomes]
rs10031502	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13115773	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13140356	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28422018	0.85[AFR][1000 genomes]
rs28575028	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28761187	0.86[AFR][1000 genomes]
rs28775982	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28842582	0.86[AFR][1000 genomes]
rs28865368	0.86[AFR][1000 genomes]
rs2903082	0.86[AFR][1000 genomes]
rs34175954	0.81[AFR][1000 genomes]
rs34818848	0.86[AFR][1000 genomes]
rs34913398	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34945220	0.86[AFR][1000 genomes]
rs35555246	0.86[AFR][1000 genomes]
rs4074142	0.87[ASN][1000 genomes]
rs4078016	0.92[ASN][1000 genomes]
rs4426781	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4456961	0.86[AFR][1000 genomes]
rs4627873	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66711826	0.86[AFR][1000 genomes]
rs6854176	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7655573	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7690605	0.82[AFR][1000 genomes]
rs7691473	0.83[AFR][1000 genomes]
rs9993126	0.86[AFR][1000 genomes]
rs9993378	0.86[AFR][1000 genomes]
rs9998114	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98043800-98048600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:98045200-98046000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:98045200-98049600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:98045400-98046400	Weak transcription	H1 Cell Line	embryonic stem cell

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