Variant report

Variant	rs4074142
Chromosome Location	chr4:98055658-98055659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10014101	0.80[EUR][1000 genomes]
rs10031502	0.91[ASN][1000 genomes]
rs11941794	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13115773	0.98[ASN][1000 genomes]
rs13140356	1.00[ASN][1000 genomes]
rs28575028	0.96[ASN][1000 genomes]
rs28775982	0.91[ASN][1000 genomes]
rs28869280	0.87[ASN][1000 genomes]
rs34913398	0.91[ASN][1000 genomes]
rs4078015	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4078016	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4426781	1.00[ASN][1000 genomes]
rs4627873	0.96[ASN][1000 genomes]
rs55649133	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56403113	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59643119	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61220489	0.84[EUR][1000 genomes]
rs66604908	0.84[EUR][1000 genomes]
rs6837816	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6854176	0.89[ASN][1000 genomes]
rs72674088	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72674090	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72674091	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72674093	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676503	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676512	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676517	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676518	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676537	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72676538	0.84[EUR][1000 genomes]
rs72676541	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7655573	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370026	chr4:98044823-98067071	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98055400-98056000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:98055400-98057400	Strong transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:98055600-98055800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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